RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 PLSCR3Q9NRY6 295 aa10.97□□□□□ -0.65
VMP1-209ENST00000588915 CHCHD3Q9NX63 227 aaKnown RBP10.97□□□□□ -0.65
VMP1-209ENST00000588915 TXNL1O43396 289 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 ORC5O43913 435 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 MOSP00540 346 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 IGHG4P01861 327 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 RAB25P57735 213 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 CFHR3Q02985 330 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 ZSCAN26Q16670 478 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 LTC4SQ16873 150 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 NKAPLQ5M9Q1 402 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 C1orf146Q5VVC0 180 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 LINC00596Q86U02 117 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 SUMF2Q8NBJ7 301 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 TMEM104Q8NE00 496 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 TNFAIP8L1Q8WVP5 186 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 C4orf3Q8WVX3 66 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 RTN4IP1Q8WWV3 396 aaPredicted RBP10.96□□□□□ -0.65
VMP1-209ENST00000588915 ST6GALNAC6Q969X2 333 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 LGALS12Q96DT0 336 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 DUX3Q96PT4 197 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 S1PR3Q99500 378 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 RASL11BQ9BPW5 248 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 ALG8Q9BVK2 526 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 DPCDQ9BVM2 203 aaPredicted RBP10.96□□□□□ -0.65
VMP1-209ENST00000588915 RAB9BQ9NP90 201 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 IL36GQ9NZH8 169 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 SCOCQ9UIL1 159 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 ST3GAL6Q9Y274 331 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 ORC6Q9Y5N6 252 aa10.96□□□□□ -0.65
VMP1-209ENST00000588915 TMEM30CPA0ZSE6 113 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 SEC14L6B5MCN3 397 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 C15orf65H3BRN8 121 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 GABRPO00591 440 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 IGF1P05019 195 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 ALPLP05186 524 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 OR5H8P0DN80 308 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 LUMP51884 338 aaPredicted RBP10.95□□□□□ -0.66
VMP1-209ENST00000588915 FHL3Q13643 280 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 TMEM30BQ3MIR4 351 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 LHFPL3Q86UP9 236 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 SATL1Q86VE3 508 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 TSEN15Q8WW01 171 aaKnown RBP10.95□□□□□ -0.66
VMP1-209ENST00000588915 ARL11Q969Q4 196 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 JAM3Q9BX67 310 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 PAK1IP1Q9NWT1 392 aaPredicted RBP10.95□□□□□ -0.66
VMP1-209ENST00000588915 GFOD1Q9NXC2 390 aa10.95□□□□□ -0.66
VMP1-209ENST00000588915 ZNF256Q9Y2P7 627 aaPredicted RBP10.95□□□□□ -0.66
VMP1-209ENST00000588915 IGHV3-72A0A0B4J1Y9 119 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 A0A1W2PPE3 182 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 ZNF780AO75290 641 aaPredicted RBP10.94□□□□□ -0.66
VMP1-209ENST00000588915 ATP5HO75947 161 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 HTR3BO95264 441 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 FADS2O95864 444 aaKnown RBP10.94□□□□□ -0.66
VMP1-209ENST00000588915 CD2P06729 351 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 VDAC1P21796 283 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 PSMB8P28062 276 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 SOX6P35712 828 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 ECI1P42126 302 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 ZNF137PP52743 207 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 GBX2P52951 348 aaPredicted RBP10.94□□□□□ -0.66
VMP1-209ENST00000588915 MPV17LQ2QL34 196 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 DEFB136Q30KP8 78 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 PIGYQ3MUY2 71 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 STEAP3Q658P3 488 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 FAM71E2Q8N5Q1 922 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 Q96MT0 163 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 PRR25Q96S07 402 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 PDCD1LG2Q9BQ51 273 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 METTL9Q9H1A3 318 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 ISG20L2Q9H9L3 353 aaKnown RBP10.94□□□□□ -0.66
VMP1-209ENST00000588915 ERVK13-1Q9NX77 482 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 STAB2Q8WWQ8 2551 aa10.94□□□□□ -0.66
VMP1-209ENST00000588915 SAC3D1A6NKF1 404 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 SDCBPO00560 298 aaPredicted RBP10.93□□□□□ -0.66
VMP1-209ENST00000588915 OR7C1O76099 320 aaPredicted RBP10.93□□□□□ -0.66
VMP1-209ENST00000588915 CSTBP04080 98 aaKnown RBP10.93□□□□□ -0.66
VMP1-209ENST00000588915 REG1BP48304 166 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 RBM11P57052 281 aaKnown RBP10.93□□□□□ -0.66
VMP1-209ENST00000588915 RUNX1Q01196 453 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 OR51A2Q8NGJ7 313 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 OR10K1Q8NGX5 313 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 OR52N1Q8NH53 320 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 MYOZ3Q8TDC0 251 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 UBE2E2Q96LR5 201 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 TMEM138Q9NPI0 162 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 MRPS18AQ9NVS2 196 aaKnown RBP10.93□□□□□ -0.66
VMP1-209ENST00000588915 GMPPBQ9Y5P6 360 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 SMAD5-AS1Q9Y6J3 95 aa10.93□□□□□ -0.66
VMP1-209ENST00000588915 TRAV39A0A0B4J263 110 aa10.92□□□□□ -0.66
VMP1-209ENST00000588915 E9PI62 339 aa10.92□□□□□ -0.66
VMP1-209ENST00000588915 MT-ND4P03905 459 aa10.92□□□□□ -0.66
VMP1-209ENST00000588915 OR8U8P0C7N1 319 aa10.92□□□□□ -0.66
VMP1-209ENST00000588915 GABRB1P18505 474 aa10.92□□□□□ -0.66
VMP1-209ENST00000588915 VHLP40337 213 aa10.92□□□□□ -0.66
VMP1-209ENST00000588915 RAB40BQ12829 278 aa10.92□□□□□ -0.66
VMP1-209ENST00000588915 ZNF260Q3ZCT1 412 aa10.92□□□□□ -0.66
VMP1-209ENST00000588915 CCDC58Q4VC31 144 aa10.92□□□□□ -0.66
VMP1-209ENST00000588915 LPCAT4Q643R3 524 aa10.92□□□□□ -0.66
VMP1-209ENST00000588915 ZNF497Q6ZNH5 498 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms