RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PIMREGQ9BSJ6 248 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 TAF9BQ9HBM6 251 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 MCUBQ9NWR8 336 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 NUBP2Q9Y5Y2 271 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 LINC00312Q9Y6C7 94 aa12.68□□□□□ -0.38
SS18-215ENST00000580642 TRBV6-7A0A0A0MS04 114 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 ZNF729A6NN14 1252 aaPredicted RBP12.67□□□□□ -0.38
SS18-215ENST00000580642 DVL1O14640 695 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 SPINT2O43291 252 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 SSX4O60224 188 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 NDUFB6O95139 128 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 GSTT2P0CG29 244 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 CGB3P0DN86 165 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 CGB7P0DN87 165 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 RCC1P18754 421 aaPredicted RBP12.67□□□□□ -0.38
SS18-215ENST00000580642 BTCP35070 178 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 EDDM3BP56851 147 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 TSPAN5P62079 268 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 HTD2P86397 168 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 EDDM3AQ14507 147 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 SURF2Q15527 256 aaPredicted RBP12.67□□□□□ -0.38
SS18-215ENST00000580642 CD276Q5ZPR3 534 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 PLET1Q6UQ28 207 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 LYPD2Q6UXB3 125 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 ZNF841Q6ZN19 808 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 TERB2Q8NHR7 220 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 C8orf46Q8TAG6 207 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 C10orf105Q8TEF2 133 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 FAM168AQ92567 244 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 CREB3L1Q96BA8 519 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 GALMQ96C23 342 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 TINAGL1Q9GZM7 467 aaPredicted RBP12.67□□□□□ -0.38
SS18-215ENST00000580642 TOLLIPQ9H0E2 274 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 EHFQ9NZC4 300 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 CTSZQ9UBR2 303 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 TENM4Q6N022 2769 aa12.67□□□□□ -0.38
SS18-215ENST00000580642 IGKV1D-8A0A087WSZ0 117 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 C12orf77C9JDV5 145 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 M0QYG6 137 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 PMP2P02689 132 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 NDUFB7P17568 137 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 RPL31P62899 125 aaKnown RBP12.66□□□□□ -0.38
SS18-215ENST00000580642 LY6G6FQ5SQ64 297 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 AVPI1Q5T686 147 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 PRSS57Q6UWY2 283 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 BTN2A1Q7KYR7 527 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 LHFPL1Q86WI0 220 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 CENPSQ8N2Z9 138 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 ZNF525Q8N782 197 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 OR4D10Q8NGI6 311 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 OR51S1Q8NGJ8 323 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 OR56B4Q8NH76 319 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 RAB39BQ96DA2 213 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 CYYR1Q96J86 154 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 SLC6A7Q99884 636 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 GAL3ST2Q9H3Q3 398 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 OCEL1Q9H607 264 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 CLN8Q9UBY8 286 aa12.66□□□□□ -0.38
SS18-215ENST00000580642 KBTBD11-OT1A0A1B0GTJ5 212 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 VWC2LB2RUY7 222 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 C15orf65H3BRN8 121 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 F2RL2O00254 374 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 RBP4P02753 201 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 TFF1P04155 84 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 TCRBP04435 133 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 HEXAP06865 529 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 SCTP09683 121 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 SELLP14151 372 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 SLC25A16P16260 332 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 ZBTB25P24278 435 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 UCP3P55916 312 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 CARTPTQ16568 116 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 DEFB113Q30KQ7 82 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 WDR25Q64LD2 544 aaPredicted RBP12.65□□□□□ -0.38
SS18-215ENST00000580642 ZNF660Q6AZW8 331 aaPredicted RBP12.65□□□□□ -0.38
SS18-215ENST00000580642 LPCAT3Q6P1A2 487 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 CCBE1Q6UXH8 406 aaPredicted RBP12.65□□□□□ -0.38
SS18-215ENST00000580642 IDO2Q6ZQW0 420 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 ZDHHC22Q8N966 263 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 OR52M1Q8NGK5 317 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 OR13A1Q8NGR1 328 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 OR10J5Q8NHC4 309 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 CCDC107Q8WV48 283 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 MAFIPQ8WZ33 124 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 MARVELD1Q9BSK0 173 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 DCTN5Q9BTE1 182 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 LIME1Q9H400 295 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 JPT1Q9UK76 154 aa12.65□□□□□ -0.38
SS18-215ENST00000580642 A0A1B0GW55 424 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 A8MXK9 166 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 ITGB1BP1O14713 200 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 TUSC2O75896 110 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 HBZP02008 142 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 DUX4L2P0CJ85 424 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 DUX4L3P0CJ86 424 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 DUX4L4P0CJ87 422 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 DUX4L5P0CJ88 424 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 DUX4L6P0CJ89 424 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 DUX4L7P0CJ90 424 aa12.64□□□□□ -0.39
SS18-215ENST00000580642 IL2RGP31785 369 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms