RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 KRTAP1-3Q8IUG1 177 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 OR5AP2Q8NGF4 316 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 DCTN5Q9BTE1 182 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 CABLES2Q9BTV7 478 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 LINC00574Q9H8X3 128 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 ING3Q9NXR8 418 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 CLN8Q9UBY8 286 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 LINC00312Q9Y6C7 94 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 A0A096LNT2 108 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 hADV38S2A0JD32 116 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 C15orf65H3BRN8 121 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 FABP7O15540 132 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 GZMHP20718 246 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 HLA-DMAP28067 261 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 SEC61A1P61619 476 aaKnown RBP13.34□□□□□ -0.27
SS18-211ENST00000578954 OR4A4PQ8NGN8 299 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 CCDC107Q8WV48 283 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 RAB39BQ96DA2 213 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 SSBP3Q9BWW4 388 aaPredicted RBP13.34□□□□□ -0.27
SS18-211ENST00000578954 HRASLSQ9HDD0 168 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 C19orf12Q9NSK7 152 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 TAS2R3Q9NYW6 316 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 UBE2J1Q9Y385 318 aaPredicted RBP13.34□□□□□ -0.27
SS18-211ENST00000578954 DOCK11Q5JSL3 2073 aa13.34□□□□□ -0.27
SS18-211ENST00000578954 TRGV10A0A0A0MS01 117 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 TRAV39A0A0B4J263 110 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 IGHV4-61A0A0C4DH41 118 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 NAP1L6A6NFF2 107 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 KIAA1324LA8MWY0 1029 aaPredicted RBP13.33□□□□□ -0.28
SS18-211ENST00000578954 C12orf77C9JDV5 145 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 RAB3DO95716 219 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 FCER2P06734 321 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 GSTT2P0CG29 244 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 HRH1P35367 487 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 FAUP35544 74 aaKnown RBP13.33□□□□□ -0.28
SS18-211ENST00000578954 GLP1RP43220 463 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 GNB2P62879 340 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 RPL31P62899 125 aaKnown RBP13.33□□□□□ -0.28
SS18-211ENST00000578954 MEF2DQ14814 521 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 HERPUD1Q15011 391 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 CDK10Q15131 360 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 ESCO2Q56NI9 601 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 RNASE10Q5GAN6 216 aaKnown RBP13.33□□□□□ -0.28
SS18-211ENST00000578954 Q5PR19 223 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 OVCH2Q7RTZ1 564 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 ZNF565Q8N9K5 539 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 LY6G5BQ8NDX9 201 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 OR4C16Q8NGL9 310 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 OR5H2Q8NGV7 314 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 MRGPRDQ8TDS7 321 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 COX4I2Q96KJ9 171 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 DMRTB1Q96MA1 342 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 NARFLQ9H6Q4 476 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 TAF9BQ9HBM6 251 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 KCNIP1Q9NZI2 227 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 KIAA2026Q5HYC2 2103 aa13.33□□□□□ -0.28
SS18-211ENST00000578954 IGKV1-6A0A0C4DH72 117 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 ZNF729A6NN14 1252 aaPredicted RBP13.32□□□□□ -0.28
SS18-211ENST00000578954 NPIPB11E5RHQ5 1161 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 HAX1O00165 279 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 LYRM1O43325 122 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 SCTP09683 121 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 CTXN2P0C2S0 81 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 ZNF735P0CB33 412 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 BTCP35070 178 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 DEFA1P59665 94 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 DEFA3P59666 94 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 ZNF273Q14593 569 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 C17orf58Q2M2W7 97 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 CHRFAM7AQ494W8 412 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 TMEM200BQ69YZ2 307 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 BTN2A1Q7KYR7 527 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 ARRDC1Q8N5I2 433 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 OR4D10Q8NGI6 311 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 DACT3Q96B18 629 aaPredicted RBP13.32□□□□□ -0.28
SS18-211ENST00000578954 FOXC2Q99958 501 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 TINAGL1Q9GZM7 467 aaPredicted RBP13.32□□□□□ -0.28
SS18-211ENST00000578954 C11orf54Q9H0W9 315 aaPredicted RBP13.32□□□□□ -0.28
SS18-211ENST00000578954 SLC2A8Q9NY64 477 aa13.32□□□□□ -0.28
SS18-211ENST00000578954 RPUSD1Q9UJJ7 312 aaKnown RBP13.32□□□□□ -0.28
SS18-211ENST00000578954 POLR3KQ9Y2Y1 108 aaPredicted RBP13.32□□□□□ -0.28
SS18-211ENST00000578954 PRRC2AP48634 2157 aaKnown RBP13.31□□□□□ -0.28
SS18-211ENST00000578954 KBTBD11-OT1A0A1B0GTJ5 212 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 C22orf46C9J442 243 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 M0QYG6 137 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 F2RL2O00254 374 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 HBZP02008 142 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 SSTR5P35346 364 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 DLX6P56179 175 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 ARPC4P59998 168 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 TMEM30BQ3MIR4 351 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 CD276Q5ZPR3 534 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 H1FXQ92522 213 aaKnown RBP13.31□□□□□ -0.28
SS18-211ENST00000578954 C1orf159Q96HA4 380 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 TOLLIPQ9H0E2 274 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 RAB9BQ9NP90 201 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 NECAP2Q9NVZ3 263 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 CALYQ9NYX4 217 aa13.31□□□□□ -0.28
SS18-211ENST00000578954 ITPR2Q14571 2701 aa13.3□□□□□ -0.28
SS18-211ENST00000578954 TRBV6-7A0A0A0MS04 114 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms