RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 TRAPPC2LH3BP13 241 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 H3BP45 60 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 CYTIPO60759 359 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 SLC25A24Q6NUK1 477 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 TDHQ8IZJ6 230 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 ZNF610Q8N9Z0 462 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 BCL2L14Q9BZR8 327 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 TINAGQ9UJW2 476 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 TRBV23-1A0A0A0MS06 115 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 TGIF2-C20orf24A0A0A6YYL0 155 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 CXorf65A6NEN9 183 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 IFITM10A6NMD0 228 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 MRPL33O75394 65 aaKnown RBP13.38□□□□□ -0.27
NUP88-207ENST00000573584 MPV17LQ2QL34 196 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 CEACAM21Q3KPI0 293 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 KHDC3LQ587J8 217 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 DPPA3Q6W0C5 159 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 ZDHHC23Q8IYP9 409 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 SAXO1Q8IYX7 474 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 IL22RA2Q969J5 263 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 CALHM2Q9HA72 323 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 TCFL5Q9UL49 500 aa13.38□□□□□ -0.27
NUP88-207ENST00000573584 NOSIPQ9Y314 301 aaKnown RBP13.38□□□□□ -0.27
NUP88-207ENST00000573584 C5orf49A4QMS7 147 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 DFFBO76075 338 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 F2RP25116 425 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 GDF1P27539 372 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 GLIPR1P48060 266 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 ARF1P84077 181 aaKnown RBP13.37□□□□□ -0.27
NUP88-207ENST00000573584 OR8G1Q15617 311 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 MRPL21Q7Z2W9 205 aaKnown RBP13.37□□□□□ -0.27
NUP88-207ENST00000573584 SLC35E3Q7Z769 313 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 MKXQ8IYA7 352 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 SIRT7Q9NRC8 400 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 IFNA5P01569 189 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 S100A2P29034 98 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 HIPK2Q9H2X6 1198 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 DEPPQ9NTK1 212 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 GNG13Q9P2W3 67 aa13.37□□□□□ -0.27
NUP88-207ENST00000573584 A0A0G2JRQ6 117 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 CYB5BO43169 146 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 HLA-HP01893 362 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 SERPINE2P07093 398 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 S100GP29377 79 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 OTX2P32243 289 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 Q0VFX4 171 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 PCSK4Q6UW60 755 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 OR51H1Q8NH63 302 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 GPR146Q96CH1 333 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 GAR1Q9NY12 217 aaKnown RBP13.36□□□□□ -0.27
NUP88-207ENST00000573584 F10P00742 488 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 HLA-DRB3P79483 266 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 NRN1LQ496H8 165 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 C20orf204Q6ZNR8 217 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 HS3ST1O14792 307 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 SYNGR1O43759 233 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 CFIP05156 583 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 RD3LP0DJH9 198 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 TMEM267Q0VDI3 215 aaPredicted RBP13.36□□□□□ -0.27
NUP88-207ENST00000573584 PYY3Q5JQD4 70 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 PILRBQ9UKJ0 227 aa13.36□□□□□ -0.27
NUP88-207ENST00000573584 LOC102723971A0A1B0GUV8 181 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 RAB11AP62491 216 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 IZUMO4Q1ZYL8 232 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 OR10J5Q8NHC4 309 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 RNASE11Q8TAA1 199 aaKnown RBP13.35□□□□□ -0.27
NUP88-207ENST00000573584 MRPL30Q8TCC3 161 aaKnown RBP13.35□□□□□ -0.27
NUP88-207ENST00000573584 PRRG4Q9BZD6 226 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 RIMS4Q9H426 269 aaPredicted RBP13.35□□□□□ -0.27
NUP88-207ENST00000573584 OR2W1Q9Y3N9 320 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 DMRT1Q9Y5R6 373 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 NCKAP5O14513 1909 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 TRAV1-1A0A0B4J248 108 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 A0A1B0GU03 582 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST1H2BKO60814 126 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST1H2BJP06899 126 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 PSG2P11465 335 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST1H2BOP23527 126 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST1H2BBP33778 126 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 CD200P41217 278 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST1H2BDP58876 126 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST1H2BCP62807 126 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST2H2BEQ16778 126 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.35□□□□□ -0.27
NUP88-207ENST00000573584 PSMF1Q92530 271 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 RDH5Q92781 318 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST1H2BHQ93079 126 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 TMEM45BQ96B21 275 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST1H2AAQ96QV6 131 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST1H2BNQ99877 126 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 HIST1H2BMQ99879 126 aa13.35□□□□□ -0.27
NUP88-207ENST00000573584 ZNF552Q9H707 407 aaPredicted RBP13.35□□□□□ -0.27
NUP88-207ENST00000573584 ERRFI1Q9UJM3 462 aaPredicted RBP13.35□□□□□ -0.27
NUP88-207ENST00000573584 PINLYPA6NC86 204 aa13.34□□□□□ -0.27
NUP88-207ENST00000573584 TRGC2P03986 189 aa13.34□□□□□ -0.27
NUP88-207ENST00000573584 GFRA1P56159 465 aa13.34□□□□□ -0.27
NUP88-207ENST00000573584 SRYQ05066 204 aa13.34□□□□□ -0.27
NUP88-207ENST00000573584 ZFP36L1Q07352 338 aaKnown RBP13.34□□□□□ -0.27
NUP88-207ENST00000573584 SPNS3Q6ZMD2 512 aa13.34□□□□□ -0.27
NUP88-207ENST00000573584 PPP1R32Q7Z5V6 425 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms