RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SLC35A2P78381 396 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 PAX5Q02548 391 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 GPR50Q13585 617 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 TRAM1Q15629 374 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 LTC4SQ16873 150 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 C17orf58Q2M2W7 97 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 PDLIM3Q53GG5 364 aaPredicted RBP6.54□□□□□ -1.36
VPS53-214ENST00000572607 HSD17B12Q53GQ0 312 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 RSBN1Q5VWQ0 802 aaPredicted RBP6.54□□□□□ -1.36
VPS53-214ENST00000572607 SLC35E4Q6ICL7 350 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 CEACAM19Q7Z692 300 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 OR10A7Q8NGE5 316 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 OR4P4Q8NGL7 312 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 OR13A1Q8NGR1 328 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 PHYHIPQ92561 330 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 AJUBAQ96IF1 538 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 AKR1E2Q96JD6 320 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 CNBD2Q96M20 576 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 OR5M11Q96RB7 305 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 UQCC2Q9BRT2 126 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 SELENOIQ9C0D9 397 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 Q9H521 79 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 ZNF286AQ9HBT8 521 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 IDI2-AS1Q9NZ38 188 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 FBLN5Q9UBX5 448 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 A0A087X0M5 115 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 A0A1B0GX30 115 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 A0A1W2PP11 408 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A10PA6NDY2 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A18PA6NE21 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A16PA6NEW6 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A20PA6NIJ5 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A7PA6NKC0 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A22PA8MWA6 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A12PA8MX19 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A5PA8MXJ8 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A23PA8MXZ1 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 OOSP1A8MZH6 123 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 BUB1B-PAK6H3BSN5 160 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 AIPO00170 330 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 PIN1P1O15428 100 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 ARL6IP5O75915 188 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 RPLP1P05386 114 aaKnown RBP6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A15PP0C7V4 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A13PP0C7W8 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A14PP0C7W9 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 FAM90A24PP0C7X0 464 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 MGMTP16455 207 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 GZMHP20718 246 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 VHLP40337 213 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 RAB13P51153 203 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 HLA-DRB5Q30154 266 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 C6orf183Q5T699 404 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 TPTE2P1Q5T6R2 138 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 LIPKQ5VXJ0 399 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 RAB12Q6IQ22 244 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 Q6ZTK2 550 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 PRSS48Q7RTY5 328 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 DYNAPQ8N1N2 210 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 PLPPR1Q8TBJ4 325 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 RPEQ96AT9 228 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 KIRREL1Q96J84 757 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 CITED1Q99966 193 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 PRSS22Q9GZN4 317 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 MMP28Q9H239 520 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 DUSP21Q9H596 190 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 ISYNA1Q9NPH2 558 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 ETAA1Q9NY74 926 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 TRAPPC2LQ9UL33 140 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 RAB26Q9ULW5 256 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 LSM2Q9Y333 95 aaKnown RBP6.53□□□□□ -1.36
VPS53-214ENST00000572607 PEX16Q9Y5Y5 336 aa6.53□□□□□ -1.36
VPS53-214ENST00000572607 KMT2CQ8NEZ4 4911 aaKnown RBP6.53□□□□□ -1.36
VPS53-214ENST00000572607 A6NDX4 124 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 SPINT2O43291 252 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 ORC5O43913 435 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 CHST1O43916 411 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 CA11O75493 328 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 ATP6V1G2O95670 118 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 MPIG6BO95866 241 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 IGLV1-47P01700 117 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 CRHBPP24387 322 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 IL3RAP26951 378 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 SSTR5P35346 364 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 GDNFP39905 211 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 GNG10P50151 68 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 SRSF4Q08170 494 aaKnown RBP6.52□□□□□ -1.37
VPS53-214ENST00000572607 MLLT11Q13015 90 aaPredicted RBP6.52□□□□□ -1.37
VPS53-214ENST00000572607 MADCAM1Q13477 382 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 IRF3Q14653 427 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 HERPUD1Q15011 391 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 C2orf68Q2NKX9 166 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 TMEM30BQ3MIR4 351 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 TRAT1Q6PIZ9 186 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 UNQ9370/PRO34162Q6UXP9 181 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 BAIAP2L2Q6UXY1 529 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 SLC16A12Q6ZSM3 486 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 C16orf82Q7Z2V1 217 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 TMEM219Q86XT9 240 aa6.52□□□□□ -1.37
VPS53-214ENST00000572607 KLHDC1Q8N7A1 406 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms