RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FOXC2Q99958 501 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 PLEKHF2Q9H8W4 249 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 Q9HAA7 133 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 SLC7A10Q9NS82 523 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 POU2F3Q9UKI9 436 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 COPS3Q9UNS2 423 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 PDZD2O15018 2839 aa4.99□□□□□ -1.61
VPS53-212ENST00000572259 ARFGEF3Q5TH69 2177 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 FBN2P35556 2912 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 TRDCB7Z8K6 153 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 KPNA4O00629 521 aaPredicted RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 SHOX2O60902 331 aaPredicted RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 ZNF432O94892 652 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 IGHG1P01857 330 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 FABP1P07148 127 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 ASAH2BP0C7U1 165 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 IFI30P13284 250 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 HOXB6P17509 224 aaKnown RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 IFNGR2P38484 337 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 DAP3P51398 398 aaKnown RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 PSMD7P51665 324 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 NKX2-5P52952 324 aaPredicted RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 CRYBA2P53672 197 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 XGP55808 180 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 BTG1P62324 171 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 LTBQ06643 244 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 ARL16Q0P5N6 197 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 TPBGQ13641 420 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 DEFB113Q30KQ7 82 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 AWAT2Q6E213 333 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 OR8G2PQ6IF36 304 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 SPNS3Q6ZMD2 512 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 OAFQ86UD1 273 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 OR1K1Q8NGR3 316 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 SLC25A44Q96H78 314 aaPredicted RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 PYURFQ96I23 114 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 RBP7Q96R05 134 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 WFDC6Q9BQY6 131 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 RSPO3Q9BXY4 272 aaPredicted RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 NAA50Q9GZZ1 169 aaKnown RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 PLEKHA1Q9HB21 404 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 RETNQ9HD89 108 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 INIPQ9NRY2 104 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 BABAM2Q9NXR7 383 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 CCDC59Q9P031 241 aaKnown RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 FBXL3Q9UKT7 428 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 RCL1Q9Y2P8 373 aaKnown RBP4.98□□□□□ -1.61
VPS53-212ENST00000572259 SLC25A15Q9Y619 301 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 ENPP4Q9Y6X5 453 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 ACANP16112 2415 aa4.98□□□□□ -1.61
VPS53-212ENST00000572259 HRNRQ86YZ3 2850 aaPredicted RBP4.97□□□□□ -1.61
VPS53-212ENST00000572259 hCG_38984A0A1B0GV85 526 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 DPRXA6NFQ7 191 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 A6NIZ1 184 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 EFCAB9A8MZ26 197 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 SNURFLB1AK76 121 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 H0YJX3 145 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 M0R036 132 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 M0R1B8 84 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 SLC1A7O00341 560 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 SIGLEC5O15389 551 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 TRAF3IP2O43734 574 aaPredicted RBP4.97□□□□□ -1.61
VPS53-212ENST00000572259 LYPD3O95274 346 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 PTHP01270 115 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 CRYAAP02489 173 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 THY1P04216 161 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 PRSS2P07478 247 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 TACSTD2P09758 323 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 EDNRAP25101 427 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 SAA4P35542 130 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 LEPP41159 167 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 ZNF83P51522 516 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 BIDP55957 195 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 RAP1BP61224 184 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 RAP1AP62834 184 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 PRKCDQ05655 676 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 RPL18Q07020 188 aaKnown RBP4.97□□□□□ -1.61
VPS53-212ENST00000572259 BSPH1Q075Z2 132 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 CEACAM16Q2WEN9 425 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 TMEM249Q2WGJ8 235 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 TIGITQ495A1 244 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 MBOAT2Q6ZWT7 520 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 AHSA2Q719I0 299 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 CEACAM19Q7Z692 300 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 DPPA2Q7Z7J5 298 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 DHFR2Q86XF0 187 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 NRMQ8IXM6 262 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 C20orf196Q8IYI0 205 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 FBXL14Q8N1E6 418 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 LINC00471Q8N535 108 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 IQCF1Q8N6M8 205 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 OR4F15Q8NGB8 312 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 OR1S2Q8NGQ3 325 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 OR6K6Q8NGW6 343 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 OR6F1Q8NGZ6 308 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 GTF3AQ92664 365 aaKnown RBP4.97□□□□□ -1.61
VPS53-212ENST00000572259 UFD1Q92890 307 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 TOMM40LQ969M1 308 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 C17orf77Q96MU5 243 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms