RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 FAM90A24PP0C7X0 464 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 VSIG10L2P0DP72 767 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 RBM39Q14498 530 aaKnown RBP16.26■□□□□ 0.19
CLK3-225ENST00000569063 C2orf68Q2NKX9 166 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 PHYHIPQ92561 330 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 LEAP2Q969E1 77 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 TMED9Q9BVK6 235 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 LIN7BQ9HAP6 207 aa16.26■□□□□ 0.19
CLK3-225ENST00000569063 MCRIP1C9JLW8 97 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 C15orf65H3BRN8 121 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 ORC5O43913 435 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 MGMTP16455 207 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 CD24P25063 80 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 MNDAP41218 407 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 LTC4SQ16873 150 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 FAM27D1Q5T7N8 215 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 Q6ZS46 218 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 LRRTM1Q86UE6 522 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 TMEM104Q8NE00 496 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 OR52M1Q8NGK5 317 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 NEK7Q8TDX7 302 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 AKR1E2Q96JD6 320 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 SELENOIQ9C0D9 397 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 BANF2Q9H503 90 aa16.25■□□□□ 0.19
CLK3-225ENST00000569063 RGS10O43665 173 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 CRTAPO75718 401 aaPredicted RBP16.24■□□□□ 0.19
CLK3-225ENST00000569063 TSPAN15O95858 294 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 IGHV3-7P01780 117 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 CRHBPP24387 322 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 HSPA13P48723 471 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 RAB12Q6IQ22 244 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 GAPTQ8N292 157 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 WIPF2Q8TF74 440 aaPredicted RBP16.24■□□□□ 0.19
CLK3-225ENST00000569063 CCDC107Q8WV48 283 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 UFD1Q92890 307 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 ARL11Q969Q4 196 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 RPEQ96AT9 228 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 Q96M66 194 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 RBM14Q96PK6 669 aaKnown RBP16.24■□□□□ 0.19
CLK3-225ENST00000569063 WNT10AQ9GZT5 417 aa16.24■□□□□ 0.19
CLK3-225ENST00000569063 AIPO00170 330 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 OR2F2O95006 317 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 GLAP06280 429 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 CSF1P09603 554 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 UCHL1P09936 223 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 UBBP0CG47 229 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 CD37P11049 281 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 SRMP19623 302 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 MADCAM1Q13477 382 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 TPBGQ13641 420 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 LIPKQ5VXJ0 399 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 GLT8D1Q68CQ7 371 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 IZUMO2Q6UXV1 221 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 CEACAM19Q7Z692 300 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 THNSL2Q86YJ6 484 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 TOMM40LQ969M1 308 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 SLC25A33Q9BSK2 321 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 CST11Q9H112 138 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 ISYNA1Q9NPH2 558 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 PEX16Q9Y5Y5 336 aa16.23■□□□□ 0.19
CLK3-225ENST00000569063 FAM90A9PA6NNJ1 464 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 CA11O75493 328 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 FAM106CPP0CH98 169 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 FUT3P21217 361 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 GNG10P50151 68 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 LOXL3P58215 753 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 HSD17B12Q53GQ0 312 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 FBLN7Q53RD9 439 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 RBM48Q5RL73 367 aaKnown RBP16.22■□□□□ 0.19
CLK3-225ENST00000569063 C1orf100Q5SVJ3 147 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 SIGIRRQ6IA17 410 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 PRSS48Q7RTY5 328 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 C11orf44Q8N8P7 122 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 CAPSLQ8WWF8 208 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 OCSTAMPQ9BR26 566 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 ETAA1Q9NY74 926 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 MEGF8Q7Z7M0 2845 aa16.22■□□□□ 0.19
CLK3-225ENST00000569063 TET2Q6N021 2002 aaPredicted RBP16.21■□□□□ 0.19
CLK3-225ENST00000569063 VWFP04275 2813 aa16.21■□□□□ 0.19
CLK3-225ENST00000569063 A0A1W2PPI3 338 aa16.21■□□□□ 0.19
CLK3-225ENST00000569063 SDCBPO00560 298 aaPredicted RBP16.21■□□□□ 0.19
CLK3-225ENST00000569063 VHLP40337 213 aa16.21■□□□□ 0.19
CLK3-225ENST00000569063 RAB7AP51149 207 aa16.21■□□□□ 0.19
CLK3-225ENST00000569063 SYT6Q5T7P8 510 aaPredicted RBP16.21■□□□□ 0.19
CLK3-225ENST00000569063 LINC00311Q8N616 119 aa16.21■□□□□ 0.19
CLK3-225ENST00000569063 C8orf31Q8N9H6 132 aa16.21■□□□□ 0.19
CLK3-225ENST00000569063 OR10X1Q8NGY0 326 aa16.21■□□□□ 0.19
CLK3-225ENST00000569063 FAM46BQ96A09 425 aa16.21■□□□□ 0.19
CLK3-225ENST00000569063 TRAPPC2LQ9UL33 140 aa16.21■□□□□ 0.19
CLK3-225ENST00000569063 PEX14O75381 377 aa16.2■□□□□ 0.18
CLK3-225ENST00000569063 AMY1AP04745 511 aa16.2■□□□□ 0.18
CLK3-225ENST00000569063 AMY2AP04746 511 aa16.2■□□□□ 0.18
CLK3-225ENST00000569063 HSMCR30P0CW71 290 aa16.2■□□□□ 0.18
CLK3-225ENST00000569063 CPEP16870 476 aa16.2■□□□□ 0.18
CLK3-225ENST00000569063 VDAC2P45880 294 aaPredicted RBP16.2■□□□□ 0.18
CLK3-225ENST00000569063 MLLT11Q13015 90 aaPredicted RBP16.2■□□□□ 0.18
CLK3-225ENST00000569063 DIAPH2-AS1Q14236 149 aa16.2■□□□□ 0.18
CLK3-225ENST00000569063 TRAM1Q15629 374 aa16.2■□□□□ 0.18
CLK3-225ENST00000569063 Q3ZCU0 254 aa16.2■□□□□ 0.18
CLK3-225ENST00000569063 ARSJQ5FYB0 599 aaPredicted RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms