RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 OR7C1O76099 320 aaPredicted RBP13.24□□□□□ -0.29
CLN3-211ENST00000564091 GBX2P52951 348 aaPredicted RBP13.24□□□□□ -0.29
CLN3-211ENST00000564091 DCTN2Q13561 401 aaKnown RBP13.24□□□□□ -0.29
CLN3-211ENST00000564091 ASCL4Q6XD76 172 aa13.24□□□□□ -0.29
CLN3-211ENST00000564091 TGIF2LXQ8IUE1 241 aa13.24□□□□□ -0.29
CLN3-211ENST00000564091 Q8N6K4 173 aa13.24□□□□□ -0.29
CLN3-211ENST00000564091 Q8N9W7 124 aa13.24□□□□□ -0.29
CLN3-211ENST00000564091 CCDC107Q8WV48 283 aa13.24□□□□□ -0.29
CLN3-211ENST00000564091 RGP1Q92546 391 aaPredicted RBP13.24□□□□□ -0.29
CLN3-211ENST00000564091 ARL11Q969Q4 196 aa13.24□□□□□ -0.29
CLN3-211ENST00000564091 MYCBPQ99417 103 aaPredicted RBP13.24□□□□□ -0.29
CLN3-211ENST00000564091 JAM3Q9BX67 310 aa13.24□□□□□ -0.29
CLN3-211ENST00000564091 ABCG5Q9H222 651 aa13.24□□□□□ -0.29
CLN3-211ENST00000564091 FAM118AQ9NWS6 357 aa13.24□□□□□ -0.29
CLN3-211ENST00000564091 ZMAT5Q9UDW3 170 aaKnown RBP13.24□□□□□ -0.29
CLN3-211ENST00000564091 GMPPBQ9Y5P6 360 aa13.24□□□□□ -0.29
CLN3-211ENST00000564091 IGHV3-43A0A0B4J1X8 118 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 TMEM30CPA0ZSE6 113 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 ZNF736B4DX44 427 aaPredicted RBP13.23□□□□□ -0.29
CLN3-211ENST00000564091 C15orf65H3BRN8 121 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 GEMIN2O14893 280 aaKnown RBP13.23□□□□□ -0.29
CLN3-211ENST00000564091 CIB2O75838 187 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 FADS2O95864 444 aaKnown RBP13.23□□□□□ -0.29
CLN3-211ENST00000564091 RPSAP08865 295 aaKnown RBP13.23□□□□□ -0.29
CLN3-211ENST00000564091 IGHV3-43DP0DP04 118 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 GZMHP20718 246 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 ALDH3A2P51648 485 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 IZUMO1Q8IYV9 350 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 CBR4Q8N4T8 237 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 OR52I1Q8NGK6 324 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 OR2T10Q8NGZ9 312 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 CPNE2Q96FN4 548 aaPredicted RBP13.23□□□□□ -0.29
CLN3-211ENST00000564091 PRR25Q96S07 402 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 PLSCR3Q9NRY6 295 aa13.23□□□□□ -0.29
CLN3-211ENST00000564091 LIN7CQ9NUP9 197 aaKnown RBP13.23□□□□□ -0.29
CLN3-211ENST00000564091 SDCBPO00560 298 aaPredicted RBP13.22□□□□□ -0.29
CLN3-211ENST00000564091 MPZL2O60487 215 aa13.22□□□□□ -0.29
CLN3-211ENST00000564091 RAMP3O60896 148 aa13.22□□□□□ -0.29
CLN3-211ENST00000564091 ATP5HO75947 161 aa13.22□□□□□ -0.29
CLN3-211ENST00000564091 MRPL28Q13084 256 aaKnown RBP13.22□□□□□ -0.29
CLN3-211ENST00000564091 GPR50Q13585 617 aa13.22□□□□□ -0.29
CLN3-211ENST00000564091 CXorf66Q5JRM2 361 aaPredicted RBP13.22□□□□□ -0.29
CLN3-211ENST00000564091 OR52N1Q8NH53 320 aa13.22□□□□□ -0.29
CLN3-211ENST00000564091 RHOXF1Q8NHV9 184 aa13.22□□□□□ -0.29
CLN3-211ENST00000564091 METTL9Q9H1A3 318 aa13.22□□□□□ -0.29
CLN3-211ENST00000564091 GFOD1Q9NXC2 390 aa13.22□□□□□ -0.29
CLN3-211ENST00000564091 LSM4Q9Y4Z0 139 aaKnown RBP13.22□□□□□ -0.29
CLN3-211ENST00000564091 U3KQK5 164 aa13.22□□□□□ -0.29
CLN3-211ENST00000564091 RYR2Q92736 4967 aa13.22□□□□□ -0.29
CLN3-211ENST00000564091 H3BNX3 289 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 SLC31A2O15432 143 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 NHLRC4P0CG21 123 aaPredicted RBP13.21□□□□□ -0.29
CLN3-211ENST00000564091 RBM11P57052 281 aaKnown RBP13.21□□□□□ -0.29
CLN3-211ENST00000564091 RAB40BQ12829 278 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 KIR2DS1Q14954 304 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 ATAD3CQ5T2N8 411 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 XAF1Q6GPH4 301 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 LINC00311Q8N616 119 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 TMEM104Q8NE00 496 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 OR52M1Q8NGK5 317 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 OR5M8Q8NGP6 311 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 OR8U1Q8NH10 309 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 RTN4IP1Q8WWV3 396 aaPredicted RBP13.21□□□□□ -0.29
CLN3-211ENST00000564091 ST6GALNAC6Q969X2 333 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 ORAI1Q96D31 301 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 S1PR3Q99500 378 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 ASCL2Q99929 193 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 HSPB9Q9BQS6 159 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 IFT22Q9H7X7 185 aa13.21□□□□□ -0.29
CLN3-211ENST00000564091 STAB2Q8WWQ8 2551 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 A0A1W2PP11 408 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 MOSP00540 346 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 MT-ND4P03905 459 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 CSTBP04080 98 aaKnown RBP13.2□□□□□ -0.3
CLN3-211ENST00000564091 SERPINA2P20848 420 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 CD1BP29016 333 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 ZNF93P35789 620 aaPredicted RBP13.2□□□□□ -0.3
CLN3-211ENST00000564091 ECI1P42126 302 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 CDX1P47902 265 aaPredicted RBP13.2□□□□□ -0.3
CLN3-211ENST00000564091 F2RL1P55085 397 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 GP2P55259 537 aaKnown RBP13.2□□□□□ -0.3
CLN3-211ENST00000564091 FOXE3Q13461 319 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 NHLRC3Q5JS37 347 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 NKAPLQ5M9Q1 402 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 DDI2Q5TDH0 399 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 GPR148Q8TDV2 347 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 NEK7Q8TDX7 302 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 TMEM106AQ96A25 262 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 Q96MT0 163 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 RASL11BQ9BPW5 248 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 GON7Q9BXV9 100 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 FAM53CQ9NYF3 392 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 IL36GQ9NZH8 169 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 SCOCQ9UIL1 159 aa13.2□□□□□ -0.3
CLN3-211ENST00000564091 SACSQ9NZJ4 4579 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 DYNC2H1Q8NCM8 4307 aaKnown RBP13.19□□□□□ -0.3
CLN3-211ENST00000564091 SEC14L6B5MCN3 397 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 CD2P06729 351 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 ELANEP08246 267 aa13.19□□□□□ -0.3
CLN3-211ENST00000564091 LIMS3P0CW19 117 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms