RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 QDPRP09417 244 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 FBP1P09467 338 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR5AC1P0C628 307 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 FAM90A15PP0C7V4 464 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 FAM90A14PP0C7W9 464 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR5H8P0DN80 308 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 TMEM225BP0DP42 221 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 SLC2A1P11166 492 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 CEACAM1P13688 526 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 MMP9P14780 707 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZNF44P15621 663 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 RAB5AP20339 215 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 SERPINA2P20848 420 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 GLRA1P23415 457 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ACKR3P25106 362 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 DUSP1P28562 367 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 BLVRBP30043 206 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 PPP1CCP36873 323 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 EIF1P41567 113 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 KCNJ3P48549 501 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 CSNK1A1P48729 337 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 PPM1FP49593 454 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 SULT1A1P50225 295 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 PDLIM4P50479 330 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 PPT1P50897 306 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 RBM11P57052 281 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 PIGPP57054 158 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 TMEM33P57088 247 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR1D5P58170 312 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 RPS23P62266 143 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 SLC35A1P78382 337 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 SRPXP78539 464 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 MRPS34P82930 218 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 EWSR1Q01844 656 aaKnown RBP eCLIP2.09□□□□□ -2.07
SPG11-223ENST00000560858 MFAP5Q13361 173 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZNF266Q14584 549 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 CLINT1Q14677 625 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 RNPS1Q15287 305 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 CNN3Q15417 329 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 SHHQ15465 462 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR8G1Q15617 311 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 EXT1Q16394 746 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 GUK1Q16774 197 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 RSPO1Q2MKA7 263 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 EIF2S3LQ2VIR3 472 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 CHRFAM7AQ494W8 412 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ACSF3Q4G176 576 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 NKAIN1Q4KMZ8 207 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 HIKESHIQ53FT3 197 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 PHYHD1Q5SRE7 291 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 GPR157Q5UAW9 335 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 FAM27BQ5VT28 67 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 C1orf189Q5VU69 101 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 RPUSD3Q6P087 351 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 HEPN1Q6WQI6 88 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 RBMS3Q6XE24 437 aaKnown RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 C16orf47Q6ZP98 133 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 Q6ZS49 121 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 C6orf201Q7Z4U5 140 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 MYPOPQ86VE0 399 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 COMMD2Q86X83 199 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 PRSS58Q8IYP2 241 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 MAML2Q8IZL2 1156 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 FAM185AQ8N0U4 392 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZFP82Q8N141 532 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 LGI3Q8N145 548 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 GPR137CQ8N3F9 429 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZNF561Q8N587 486 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 CCDC71LQ8N9Z2 235 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 Q8NFD4 153 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 GJC3Q8NFK1 279 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 TSTD1Q8NFU3 115 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR10G3Q8NGC4 313 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR51T1Q8NGJ9 327 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR5L2Q8NGL0 311 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR5D18Q8NGL1 313 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 OR1J1Q8NGS3 322 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 C2CD4CQ8TF44 421 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 SECTM1Q8WVN6 248 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 MAFIPQ8WZ33 124 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 TCEAL3Q969E4 200 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 IL22RA2Q969J5 263 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 PIGTQ969N2 578 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 MUCL1Q96DR8 90 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 C14orf79Q96F83 325 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 BSCL2Q96G97 398 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZNF799Q96GE5 643 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 PGAM5Q96HS1 289 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 AKR1E2Q96JD6 320 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 RASL10BQ96S79 203 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 GPER1Q99527 375 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 SULT4A1Q9BR01 284 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 PIGQQ9BRB3 760 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 NUDT22Q9BRQ3 303 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 ZNF2Q9BSG1 426 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 HDHD3Q9BSH5 251 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 NAA11Q9BSU3 229 aaPredicted RBP2.09□□□□□ -2.07
SPG11-223ENST00000560858 CRB3Q9BUF7 120 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 PBDC1Q9BVG4 233 aa2.09□□□□□ -2.07
SPG11-223ENST00000560858 C1QTNF5Q9BXJ0 243 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms