RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 KCNMB1Q16558 191 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 OTPQ5XKR4 325 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 WDR25Q64LD2 544 aaPredicted RBP9.41□□□□□ -0.9
USP3-206ENST00000558157 C16orf82Q7Z2V1 217 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 MRGPRGQ86SM5 289 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 TMEM252Q8N6L7 170 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 CCDC71LQ8N9Z2 235 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 CPEB3Q8NE35 698 aaKnown RBP9.41□□□□□ -0.9
USP3-206ENST00000558157 OR2AJ1Q8NGZ0 328 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 ZNF721Q8TF20 911 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 TMEM171Q8WVE6 324 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 EXTL1Q92935 676 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 DDIT4LQ96D03 193 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 SLC35E1Q96K37 410 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 TBX15Q96SF7 602 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 NECAP2Q9NVZ3 263 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 FOXJ2Q9P0K8 574 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 ANXA10Q9UJ72 324 aa9.41□□□□□ -0.9
USP3-206ENST00000558157 TRBV11-1A0A0K0K1C0 115 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 LOC101059948A0A1B0GTJ6 334 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 FAM24AA6NFZ4 105 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 NKX6-3A6NJ46 265 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 A8MXE2 369 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 IGKV3-11P04433 115 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 SELEP16581 610 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 MDKP21741 143 aaPredicted RBP9.4□□□□□ -0.9
USP3-206ENST00000558157 NKX2-1P43699 371 aaPredicted RBP9.4□□□□□ -0.9
USP3-206ENST00000558157 CD226Q15762 336 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 C11orf42Q8N5U0 333 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 OR2D3Q8NGH3 330 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 OR5C1Q8NGR4 320 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 OR2V1Q8NHB1 315 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 ATP5SQ99766 215 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 WDR54Q9H977 334 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 ELL3Q9HB65 397 aaPredicted RBP9.4□□□□□ -0.9
USP3-206ENST00000558157 ZNF701Q9NV72 531 aaPredicted RBP9.4□□□□□ -0.9
USP3-206ENST00000558157 PRSS50Q9UI38 385 aa9.4□□□□□ -0.9
USP3-206ENST00000558157 CACNA1CQ13936 2221 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 NPIPB13A6NJU9 1138 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 ZNF705FA8MVS1 300 aaPredicted RBP9.4□□□□□ -0.91
USP3-206ENST00000558157 NPIPB4C9JG80 1138 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 ZNF705DP0CH99 300 aaPredicted RBP9.4□□□□□ -0.91
USP3-206ENST00000558157 ZNF705BP0CI00 300 aaPredicted RBP9.4□□□□□ -0.91
USP3-206ENST00000558157 PAFAH1B2P68402 229 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 BSXQ3C1V8 233 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 P4HA3Q7Z4N8 544 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 SLC24A4Q8NFF2 622 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 OR2T10Q8NGZ9 312 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 GPER1Q99527 375 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 CENPMQ9NSP4 180 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 FUT9Q9Y231 359 aa9.4□□□□□ -0.91
USP3-206ENST00000558157 SDK2Q58EX2 2172 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 TRAV39A0A0B4J263 110 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 PRKNO60260 465 aaPredicted RBP9.39□□□□□ -0.91
USP3-206ENST00000558157 YPEL1O60688 119 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 SYNGR4O95473 234 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 DTYMKP23919 212 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 CHRNB4P30926 498 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 ZNF787Q6DD87 383 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 KCNIP4Q6PIL6 250 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 C6orf15Q6UXA7 325 aaPredicted RBP9.39□□□□□ -0.91
USP3-206ENST00000558157 TIPARPQ7Z3E1 657 aaKnown RBP9.39□□□□□ -0.91
USP3-206ENST00000558157 TMEM123Q8N131 208 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 IL22RA1Q8N6P7 574 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 KCNE4Q8WWG9 221 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 TMEM37Q8WXS4 190 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 MOB3AQ96BX8 217 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 TECTBQ96PL2 329 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 YPEL2Q96QA6 119 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 SLC2A9Q9NRM0 540 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 TMEM106BQ9NUM4 274 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 NXT1Q9UKK6 140 aaKnown RBP9.39□□□□□ -0.91
USP3-206ENST00000558157 DUXBA0A1W2PPF3 345 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 PLPP3O14495 311 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 MSTNO14793 375 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 MPDZO75970 2070 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 KBTBD11O94819 623 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 MPZL1O95297 269 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 GZMHP20718 246 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 CCL1P22362 96 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 DYNLT3P51808 116 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 NHLH1Q02575 133 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 SP6Q3SY56 376 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 SMIM15Q7Z3B0 74 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 ZNF248Q8NDW4 579 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 RNASE8Q8TDE3 154 aaKnown RBP9.39□□□□□ -0.91
USP3-206ENST00000558157 RELTQ969Z4 430 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 SLAMF6Q96DU3 332 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 FAM122AQ96E09 287 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 TP53RKQ96S44 253 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 SMIM7Q9BQ49 75 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 OR51I2Q9H344 312 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 COPS7AQ9UBW8 275 aa9.39□□□□□ -0.91
USP3-206ENST00000558157 CFAP54Q96N23 3096 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 FAM221AA4D161 298 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 ZFP92A6NM28 416 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 TMEM250H0YL14 139 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 KLF7O75840 302 aaPredicted RBP9.38□□□□□ -0.91
USP3-206ENST00000558157 IL33O95760 270 aa9.38□□□□□ -0.91
USP3-206ENST00000558157 PPBPP02775 128 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms