RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 NUP37Q8NFH4 326 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 OR10Z1Q8NGY1 313 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 TMEM171Q8WVE6 324 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 KIRREL1Q96J84 757 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 UFSP2Q9NUQ7 469 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 OR14J1Q9UGF5 321 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 TRAPPC2LQ9UL33 140 aa14.22□□□□□ -0.13
LDLR-206ENST00000557958 I3L521 148 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 IFNL4K9M1U5 179 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 OR2F2O95006 317 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 LMO1P25800 156 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 OR2F1Q13607 317 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 VHLLQ6RSH7 139 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 FAM90A1Q86YD7 464 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 WFDC8Q8IUA0 241 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 GAPTQ8N292 157 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 INO80EQ8NBZ0 244 aaPredicted RBP14.21□□□□□ -0.13
LDLR-206ENST00000557958 C2orf50Q96LR7 162 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 CABLES2Q9BTV7 478 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 NGBQ9NPG2 151 aa14.21□□□□□ -0.13
LDLR-206ENST00000557958 FBXO9Q9UK97 447 aaPredicted RBP14.21□□□□□ -0.13
LDLR-206ENST00000557958 NPIPB11E5RHQ5 1161 aa14.21□□□□□ -0.14
LDLR-206ENST00000557958 ADAP1O75689 374 aa14.21□□□□□ -0.14
LDLR-206ENST00000557958 TUSC2O75896 110 aa14.21□□□□□ -0.14
LDLR-206ENST00000557958 ZNF205O95201 554 aa14.21□□□□□ -0.14
LDLR-206ENST00000557958 PTBP3O95758 552 aaKnown RBP14.21□□□□□ -0.14
LDLR-206ENST00000557958 PHLDA2Q53GA4 152 aa14.21□□□□□ -0.14
LDLR-206ENST00000557958 ZNF826PQ6ZT77 177 aa14.21□□□□□ -0.14
LDLR-206ENST00000557958 CMTM1Q8IZ96 169 aa14.21□□□□□ -0.14
LDLR-206ENST00000557958 MED9Q9NWA0 146 aa14.21□□□□□ -0.14
LDLR-206ENST00000557958 RDH8Q9NYR8 311 aa14.21□□□□□ -0.14
LDLR-206ENST00000557958 LOC105371267A0A1B0GV96 52 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 TMEM30CPA0ZSE6 113 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 GPR31O00270 319 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 CFDP00746 253 aaPredicted RBP14.2□□□□□ -0.14
LDLR-206ENST00000557958 CFHR2P36980 270 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 ASCL1P50553 236 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 RND3P61587 244 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 ESPL1Q14674 2120 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 HERPUD1Q15011 391 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 CDSNQ15517 529 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 GALNT11Q8NCW6 608 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 LRRC29Q8WV35 223 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 KCNIP1Q9NZI2 227 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 TNFSF18Q9UNG2 199 aa14.2□□□□□ -0.14
LDLR-206ENST00000557958 TRBV6-7A0A0A0MS04 114 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 PIGBOS1A0A0B4J2F0 54 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 HOXB5P09067 269 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 RCC1P18754 421 aaPredicted RBP14.19□□□□□ -0.14
LDLR-206ENST00000557958 TNFSF4P23510 183 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 ATXN7L3Q14CW9 347 aaPredicted RBP14.19□□□□□ -0.14
LDLR-206ENST00000557958 C20orf204Q6ZNR8 217 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 LRP11Q86VZ4 500 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 LGI3Q8N145 548 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 LILRB1Q8NHL6 650 aaPredicted RBP14.19□□□□□ -0.14
LDLR-206ENST00000557958 SECTM1Q8WVN6 248 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 SLC5A7Q9GZV3 580 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 WIPI2Q9Y4P8 454 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 USP24Q9UPU5 2620 aa14.19□□□□□ -0.14
LDLR-206ENST00000557958 MPPED1O15442 326 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 OR5AC1P0C628 307 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 NUP62P37198 522 aaPredicted RBP14.18□□□□□ -0.14
LDLR-206ENST00000557958 TMEM187Q14656 261 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 ACOT7LQ6ZUV0 252 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 LRTM2Q8N967 370 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 PLPPR1Q8TBJ4 325 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 MBNL3Q9NUK0 354 aaKnown RBP14.18□□□□□ -0.14
LDLR-206ENST00000557958 PRR13Q9NZ81 148 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 MBD2Q9UBB5 411 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 OR2W1Q9Y3N9 320 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 RELNP78509 3460 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 VSTM5A8MXK1 200 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 WNT9BO14905 357 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 B3GALNT1O75752 331 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 MSMPQ1L6U9 139 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 SLC35E4Q6ICL7 350 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 LIAT1Q6ZQX7 453 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 IL1F10Q8WWZ1 152 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 MRPL24Q96A35 216 aaKnown RBP14.18□□□□□ -0.14
LDLR-206ENST00000557958 MEGF10Q96KG7 1140 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 WFIKKN1Q96NZ8 548 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 OR2V2Q96R30 315 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 SEBOXQ9HB31 216 aaPredicted RBP14.18□□□□□ -0.14
LDLR-206ENST00000557958 KCNJ16Q9NPI9 418 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 ZDHHC8Q9ULC8 765 aa14.18□□□□□ -0.14
LDLR-206ENST00000557958 IGKV1-6A0A0C4DH72 117 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 C3orf85A0A1B0GTC6 90 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 KANTRA0A1W2PQU2 76 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 SRRM5B3KS81 715 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 PHF1O43189 567 aaPredicted RBP14.17□□□□□ -0.14
LDLR-206ENST00000557958 HSPA12AO43301 675 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 GRNP28799 593 aaKnown RBP14.17□□□□□ -0.14
LDLR-206ENST00000557958 GNRHRP30968 328 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 IAH1Q2TAA2 248 aaPredicted RBP14.17□□□□□ -0.14
LDLR-206ENST00000557958 SLC51BQ86UW2 128 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 H1FOOQ8IZA3 346 aaPredicted RBP14.17□□□□□ -0.14
LDLR-206ENST00000557958 KCNRGQ8N5I3 272 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 PPP1R35Q8TAP8 253 aa14.17□□□□□ -0.14
LDLR-206ENST00000557958 RBPMSQ93062 196 aaKnown RBP14.17□□□□□ -0.14
LDLR-206ENST00000557958 MRPL37Q9BZE1 423 aaKnown RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms