RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 KRASP01116 189 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 PLP1P60201 277 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 SMAD3P84022 425 aaKnown RBP11.92□□□□□ -0.5
SHMT2-226ENST00000556825 ACSF3Q4G176 576 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-226ENST00000556825 ZNF776Q68DI1 518 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-226ENST00000556825 FCRL6Q6DN72 434 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 OR2M3Q8NG83 312 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 OR10V1Q8NGI7 309 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 DPF1Q92782 380 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 PPP1R14AQ96A00 147 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 TSSK2Q96PF2 358 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 ELOVL3Q9HB03 270 aa11.92□□□□□ -0.5
SHMT2-226ENST00000556825 A0A0B4J2E0 115 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 A0A1B0GX12 115 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 GLOD5A6NK44 160 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 F2Z2F3 143 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 TTRP02766 147 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 OMGP23515 440 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 TMEM187Q14656 261 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 ALG10Q5BKT4 473 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 LYZL2Q7Z4W2 148 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 LRTM2Q8N967 370 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 OR2AE1Q8NHA4 323 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 PLPPR1Q8TBJ4 325 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 NEUROG1Q92886 237 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 PSMG3Q9BT73 122 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-226ENST00000556825 NKX2-4Q9H2Z4 354 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 FBRSQ9HAH7 460 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 FBLN5Q9UBX5 448 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 SPACA6W5XKT8 324 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 ZNF737O75373 536 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 DBIP07108 87 aaKnown RBP11.91□□□□□ -0.5
SHMT2-226ENST00000556825 AMTP48728 403 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 DYNLT3P51808 116 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 MEF2BQ02080 365 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-226ENST00000556825 GPM6BQ13491 265 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 CD300EQ496F6 205 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-226ENST00000556825 C19orf35Q6ZS72 473 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 ATOH7Q8N100 152 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 TMEM252Q8N6L7 170 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 PLD4Q96BZ4 506 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 CNRIP1Q96F85 164 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-226ENST00000556825 C18orf12Q96KH6 178 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 POLR1DQ9Y2S0 133 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 ANAPC1Q9H1A4 1944 aa11.91□□□□□ -0.5
SHMT2-226ENST00000556825 A0A0A6YYD5 115 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 A0A0G2JMM0 328 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 TRBV7-9A0A0J9YWB2 115 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 A0A1W2PPB8 328 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 C2orf72A6NCS6 295 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 ZNF716A6NP11 495 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 KIR3DP1A8MWS1 328 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 S1PR2O95136 353 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 CGAP01215 116 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 HIST1H1DP16402 221 aaKnown RBP11.9□□□□□ -0.5
SHMT2-226ENST00000556825 MLF1P58340 268 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 MRPS34P82930 218 aaKnown RBP11.9□□□□□ -0.5
SHMT2-226ENST00000556825 COL9A2Q14055 689 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-226ENST00000556825 KIAA1644Q3SXP7 199 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 C1orf140Q5VVS0 124 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 ARHGEF39Q8N4T4 335 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 LILRA3Q8N6C8 439 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-226ENST00000556825 LMF2Q9BU23 707 aaKnown RBP11.9□□□□□ -0.5
SHMT2-226ENST00000556825 RPRMQ9NS64 109 aa11.9□□□□□ -0.5
SHMT2-226ENST00000556825 SPAARA0A1B0GVQ0 90 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 OR2AG2A6NM03 316 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 METTL12A8MUP2 240 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 MPPED1O15442 326 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 NDUFS4O43181 175 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 RHBDL1O75783 438 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 IGLL1P15814 213 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 CYB561P49447 251 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 FMODQ06828 376 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 ZNF726P1Q15940 193 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 HLA-BQ31612 363 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 PLAC9Q5JTB6 97 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 TPRG1Q6ZUI0 275 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 AMELYQ99218 206 aa11.9□□□□□ -0.51
SHMT2-226ENST00000556825 MRPL18Q9H0U6 180 aaKnown RBP11.9□□□□□ -0.51
SHMT2-226ENST00000556825 SRA1Q9HD15 236 aaKnown RBP11.9□□□□□ -0.51
SHMT2-226ENST00000556825 BRCA2P51587 3418 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 A0A1B0GWA3 101 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 GAGE12HA6NDE8 117 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 TMEM14DPA8MWL7 114 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 H0YJW9 148 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 RAD51DO75771 328 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 C8orf89P0DMQ9 161 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 RRADP55042 308 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 RELBQ01201 579 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 IGFBP7Q16270 282 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 LTC4SQ16873 150 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 SDF2Q99470 211 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 ST6GALNAC5Q9BVH7 336 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 SLC7A10Q9NS82 523 aa11.89□□□□□ -0.51
SHMT2-226ENST00000556825 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.88□□□□□ -0.51
SHMT2-226ENST00000556825 ZNF133P52736 654 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-226ENST00000556825 SNU13P55769 128 aaKnown RBP11.88□□□□□ -0.51
SHMT2-226ENST00000556825 ARF3P61204 181 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-226ENST00000556825 FAM58AQ8N1B3 248 aa11.88□□□□□ -0.51
SHMT2-226ENST00000556825 OR4N2Q8NGD1 307 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms