RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 CNIH2Q6PI25 160 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 Q6ZPA2 131 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 C1orf122Q6ZSJ8 110 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 C11orf42Q8N5U0 333 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 Q8N7P7 452 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 SETD6Q8TBK2 473 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 PCGF1Q9BSM1 259 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 GAL3ST2Q9H3Q3 398 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 MBNL3Q9NUK0 354 aaKnown RBP10.05□□□□□ -0.8
SHMT2-209ENST00000553949 MRPS7Q9Y2R9 242 aaKnown RBP10.05□□□□□ -0.8
SHMT2-209ENST00000553949 ABCA1O95477 2261 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 CSPG4Q6UVK1 2322 aa10.05□□□□□ -0.8
SHMT2-209ENST00000553949 YLPM1P49750 1951 aaKnown RBP10.05□□□□□ -0.8
SHMT2-209ENST00000553949 hCG_1809904A0A1W2PP81 198 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 A0A1W2PPE2 198 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 A0A1W2PR64 198 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 A0A1W2PRV1 198 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 POM121CA8CG34 1229 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 C12orf77C9JDV5 145 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 C15orf65H3BRN8 121 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 ORC5O43913 435 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 CLPXO76031 633 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 HLA-DQB1P01920 261 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 RBP4P02753 201 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 PTHLHP12272 177 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 RCC1P18754 421 aaPredicted RBP10.04□□□□□ -0.8
SHMT2-209ENST00000553949 PRTN3P24158 256 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 SSTR5P35346 364 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 ERVFRD-1P60508 538 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 PITPNAQ00169 270 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 MADCAM1Q13477 382 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 TRAT1Q6PIZ9 186 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 MOB1BQ7L9L4 216 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 VMO1Q7Z5L0 202 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 NUDCD2Q8WVJ2 157 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 UPRTQ96BW1 309 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 DIRAS2Q96HU8 199 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 TBX15Q96SF7 602 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 METTL8Q9H825 291 aaKnown RBP10.04□□□□□ -0.8
SHMT2-209ENST00000553949 LINC00574Q9H8X3 128 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 Q9N2K0 584 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 CALYQ9NYX4 217 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 KCNIP1Q9NZI2 227 aa10.04□□□□□ -0.8
SHMT2-209ENST00000553949 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.04□□□□□ -0.82e-7■■■■■ 43.2
SHMT2-209ENST00000553949 ARHGAP32A7KAX9 2087 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 NPIPB11E5RHQ5 1161 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 SSX5O60225 188 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 FCGR3AP08637 254 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 IGHV1-8P0DP01 117 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 OMGP23515 440 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 TNFSF8P32971 234 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 S100A5P33763 92 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 DLX1P56177 255 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 FAM120AOSQ5T036 256 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 PRAMEF5Q5TYX0 476 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 HEPN1Q6WQI6 88 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 C1orf229Q6ZS94 237 aaPredicted RBP10.03□□□□□ -0.8
SHMT2-209ENST00000553949 Q71RC1 249 aaPredicted RBP10.03□□□□□ -0.8
SHMT2-209ENST00000553949 ZNF554Q86TJ5 538 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 ARL11Q969Q4 196 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 UNKLQ9H9P5 680 aaKnown RBP10.03□□□□□ -0.8
SHMT2-209ENST00000553949 TAF9BQ9HBM6 251 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 SIRT7Q9NRC8 400 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 TMEM160Q9NX00 188 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 ZNF230Q9UIE0 474 aaPredicted RBP10.03□□□□□ -0.8
SHMT2-209ENST00000553949 SVEP1Q4LDE5 3571 aa10.03□□□□□ -0.8
SHMT2-209ENST00000553949 F8P00451 2351 aa10.02□□□□□ -0.8
SHMT2-209ENST00000553949 SPINT2O43291 252 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 MMP23AO75900 390 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 TPPPO94811 219 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 DTYMKP23919 212 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 GDNFP39905 211 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 PRB3Q04118 309 aaPredicted RBP10.02□□□□□ -0.81
SHMT2-209ENST00000553949 HMGN3Q15651 99 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 NCR3LG1Q68D85 454 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 BAIAP2L2Q6UXY1 529 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 ZNF782Q6ZMW2 699 aaPredicted RBP10.02□□□□□ -0.81
SHMT2-209ENST00000553949 SNX29P2Q8IUI4 249 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 PRR18Q8N4B5 295 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 OR6Q1Q8NGQ2 317 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 OR1L1Q8NH94 360 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 RFESDQ8TAC1 157 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 UBALD1Q8TB05 177 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 MAFIPQ8WZ33 124 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 GCDHQ92947 438 aaPredicted RBP10.02□□□□□ -0.81
SHMT2-209ENST00000553949 TNFRSF14Q92956 283 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 RAB9BQ9NP90 201 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 IDI2-AS1Q9NZ38 188 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 MGAT4AQ9UM21 535 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 SESN1Q9Y6P5 492 aa10.02□□□□□ -0.81
SHMT2-209ENST00000553949 MEIOCA2RUB1 952 aa10.01□□□□□ -0.81
SHMT2-209ENST00000553949 TRDCB7Z8K6 153 aa10.01□□□□□ -0.81
SHMT2-209ENST00000553949 F2RL2O00254 374 aa10.01□□□□□ -0.81
SHMT2-209ENST00000553949 HBZP02008 142 aa10.01□□□□□ -0.81
SHMT2-209ENST00000553949 FPR2P25090 351 aa10.01□□□□□ -0.81
SHMT2-209ENST00000553949 PRSS3P35030 304 aa10.01□□□□□ -0.81
SHMT2-209ENST00000553949 HLA-DRB3P79483 266 aa10.01□□□□□ -0.81
SHMT2-209ENST00000553949 GUCA2AQ02747 115 aa10.01□□□□□ -0.81
SHMT2-209ENST00000553949 SRSF7Q16629 238 aaKnown RBP eCLIP10.01□□□□□ -0.81
SHMT2-209ENST00000553949 LTC4SQ16873 150 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms