RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 RAB35Q15286 201 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 LYSMD4Q5XG99 296 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 Q6ZRM9 215 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 TBC1D26Q86UD7 250 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 TDHQ8IZJ6 230 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 SELENOHQ8IZQ5 122 aaKnown RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 OR13D1Q8NGV5 346 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF385AQ96PM9 386 aaKnown RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ALKBH3Q96Q83 286 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 PCGF1Q9BSM1 259 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 RBKSQ9H477 322 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 UBE2ZQ9H832 354 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 AURKAIP1Q9NWT8 199 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 TAAR3PQ9P1P4 343 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 IL36RNQ9UBH0 155 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 PITPNC1Q9UKF7 332 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 TCFL5Q9UL49 500 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 LAMP3Q9UQV4 416 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 RNF115Q9Y4L5 304 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 RBM7Q9Y580 266 aaKnown RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 V9GYS6 101 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 USF3Q68DE3 2245 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 TRBV24-1A0A075B6N3 115 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 IGHV3-64DA0A0J9YX35 117 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ANKUB1A6NFN9 424 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF732B4DXR9 585 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 TRDCB7Z8K6 153 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 DVL1O14640 695 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 CYB5R3P00387 301 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 PPYP01298 95 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 PFN1P07737 140 aaKnown RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 FGF7P21781 194 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 MRPS34P82930 218 aaKnown RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 FOXO1Q12778 655 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 PMS2P11Q13670 270 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF266Q14584 549 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 NCR3LG1Q68D85 454 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 C16orf82Q7Z2V1 217 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ANKRD37Q7Z713 158 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ST8SIA1Q92185 356 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 MOB3AQ96BX8 217 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 UCN2Q96RP3 112 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ACTR3CQ9C0K3 210 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-214ENST00000552783 TMEM222Q9H0R3 208 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF442Q9H7R0 627 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 MOB1AQ9H8S9 216 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 PLEKHF2Q9H8W4 249 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 MYOTQ9UBF9 498 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 MTCH2Q9Y6C9 303 aa4.17□□□□□ -1.74
LIMA1-214ENST00000552783 IGKV1D-33P01593 117 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 IGKV1-33P01594 117 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 SCTP09683 121 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 PAX5Q02548 391 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 HERPUD1Q15011 391 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 ADIRFQ15847 76 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 HIST3H3Q16695 136 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 LCE2DQ5TA82 110 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 SLC25A24Q6NUK1 477 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF66Q6ZN08 573 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 HAPLN4Q86UW8 402 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 MAML2Q8IZL2 1156 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 GAPTQ8N292 157 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 TMEM256Q8N2U0 113 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 OR10A7Q8NGE5 316 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 OR1K1Q8NGR3 316 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 OR6X1Q8NH79 312 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 RNASEH2CQ8TDP1 164 aaKnown RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 RAB24Q969Q5 203 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 ZNF501Q96CX3 271 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 CCDC74BQ96LY2 380 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 SMDT1Q9H4I9 107 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 OCIAD1Q9NX40 245 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 CRIM1Q9NZV1 1036 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 IL17BQ9UHF5 180 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 FUT9Q9Y231 359 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 A0A1W2PNV4 684 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 A0A1W2PR77 199 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 LRRC3CA6NJW4 275 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 CEBPZOSA8MTT3 80 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 OR7C1O76099 320 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 BCL2P10415 239 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 FGF5P12034 268 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 BMP5P22003 454 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 NTF4P34130 210 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 PTGDSP41222 190 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 CD81P60033 236 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 PLPPR5Q32ZL2 321 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 NMSQ5H8A3 153 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 IL22RA1Q8N6P7 574 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 OR51G1Q8NGK1 321 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 PIGCQ92535 297 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 NABP1Q96AH0 204 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 ANGPTL4Q9BY76 406 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 LRFN1Q9P244 771 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 SEMA5BQ9P283 1151 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 ST3GAL6Q9Y274 331 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 POLR3KQ9Y2Y1 108 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-214ENST00000552783 SIT1Q9Y3P8 196 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 GTF3C1Q12789 2109 aa4.16□□□□□ -1.74
LIMA1-214ENST00000552783 IGKV1-6A0A0C4DH72 117 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms