RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 PURGQ9UJV8 347 aaKnown RBP9.38□□□□□ -0.91
CUX1-212ENST00000547394 TP53TG5Q9Y2B4 290 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 RBM7Q9Y580 266 aaKnown RBP9.38□□□□□ -0.91
CUX1-212ENST00000547394 ATP23Q9Y6H3 246 aa9.38□□□□□ -0.91
CUX1-212ENST00000547394 A0A1B0GV50 99 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 K7EPK0 472 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 RAC2P15153 192 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 NUP62P37198 522 aaPredicted RBP9.37□□□□□ -0.91
CUX1-212ENST00000547394 CXorf66Q5JRM2 361 aaPredicted RBP9.37□□□□□ -0.91
CUX1-212ENST00000547394 FAM71E2Q8N5Q1 922 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 OR2Z1Q8NG97 314 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 RFESDQ8TAC1 157 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 RSRP1Q9BUV0 290 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 SCNM1Q9BWG6 230 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 OPA3Q9H6K4 179 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 PLSCR4Q9NRQ2 329 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 FBXL17Q9UF56 701 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 ZDHHC8Q9ULC8 765 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 KCNS2Q9ULS6 477 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 PCDHB10Q9UN67 800 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 SPTAN1Q13813 2472 aaKnown RBP9.37□□□□□ -0.91
CUX1-212ENST00000547394 IGHV3OR15-7A0A075B7D8 119 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 TRBV6-7A0A0A0MS04 114 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 IGHV3-43A0A0B4J1X8 118 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 LRP5LA4QPB2 252 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 PTBP3O95758 552 aaKnown RBP9.37□□□□□ -0.91
CUX1-212ENST00000547394 OR8U9P0C7N5 309 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 IGHV3-43DP0DP04 118 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 TMEM33P57088 247 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 POLR2GP62487 172 aaKnown RBP eCLIP9.37□□□□□ -0.91
CUX1-212ENST00000547394 NHLH2Q02577 135 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 BAP18Q8IXM2 172 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 C11orf53Q8IXP5 236 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 OR8U1Q8NH10 309 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 OR10J5Q8NHC4 309 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 NRIP2Q9BQI9 281 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 MEMO1Q9Y316 297 aa9.37□□□□□ -0.91
CUX1-212ENST00000547394 DEFB108AA8MXU0 73 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 AHRRA9YTQ3 701 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 ATXN7O15265 892 aaPredicted RBP9.36□□□□□ -0.91
CUX1-212ENST00000547394 ADAM20O43506 726 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 CNOT4O95628 575 aaKnown RBP9.36□□□□□ -0.91
CUX1-212ENST00000547394 HOXD4P09016 255 aaPredicted RBP9.36□□□□□ -0.91
CUX1-212ENST00000547394 Q6ZS92 163 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 PRRX2Q99811 253 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 BARX1Q9HBU1 254 aaPredicted RBP9.36□□□□□ -0.91
CUX1-212ENST00000547394 A0A0G2JRQ6 117 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 OR5H1A6NKK0 313 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 IQCF6A8MYZ5 107 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 H3BP45 60 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 DEDDO75618 318 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 HAND1O96004 215 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 PGA5P0DJD9 388 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 EDDM3AQ14507 147 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 ZNF695Q8IW36 515 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 OR1L1Q8NH94 360 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 LILRB1Q8NHL6 650 aaPredicted RBP9.36□□□□□ -0.91
CUX1-212ENST00000547394 C18orf12Q96KH6 178 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 HRH4Q9H3N8 390 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 PLA2G2EQ9NZK7 142 aa9.36□□□□□ -0.91
CUX1-212ENST00000547394 RCL1Q9Y2P8 373 aaKnown RBP9.36□□□□□ -0.91
CUX1-212ENST00000547394 SPTBN1Q01082 2364 aaKnown RBP9.35□□□□□ -0.91
CUX1-212ENST00000547394 TRIM77I1YAP6 450 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 APOC3P02656 99 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 TPT1P13693 172 aaKnown RBP9.35□□□□□ -0.91
CUX1-212ENST00000547394 GCH1P30793 250 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 ERVK11-1P61568 191 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 CLINT1Q14677 625 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 GNMTQ14749 295 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM76BQ5HYJ3 339 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 ATRAIDQ6UW56 229 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 LGI3Q8N145 548 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 BVESQ8NE79 360 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 OR8G5Q8NG78 346 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 MRGPRDQ8TDS7 321 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 GALNT14Q96FL9 552 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 PKIBQ9C010 78 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 TAF9BQ9HBM6 251 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 WFDC1Q9HC57 220 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 AMDHD2Q9Y303 409 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 DOCK11Q5JSL3 2073 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A10PA6NDY2 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A18PA6NE21 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A16PA6NEW6 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A20PA6NIJ5 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A8PA6NJQ4 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A7PA6NKC0 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 ZNF705EA8MWA4 302 aaPredicted RBP9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A22PA8MWA6 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A12PA8MX19 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A5PA8MXJ8 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A23PA8MXZ1 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 ATP6V1G2-DDX39BF2Z307 99 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 SPRY3O43610 288 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 SSSCA1O60232 199 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 C1QL1O75973 258 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A15PP0C7V4 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A13PP0C7W8 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A14PP0C7W9 464 aa9.35□□□□□ -0.91
CUX1-212ENST00000547394 FAM90A24PP0C7X0 464 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms