RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SRP19P09132 144 aaKnown RBP12.44□□□□□ -0.42
LIMS1-215ENST00000544547 FHL5Q5TD97 284 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 TMEM92Q6UXU6 159 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 KLHDC1Q8N7A1 406 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 NOXO1Q8NFA2 376 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 VOPP1Q96AW1 172 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 MTCH1Q9NZJ7 389 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 PAGE4O60829 102 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 ERVFRD-1P60508 538 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 RSPO4Q2I0M5 234 aaPredicted RBP12.43□□□□□ -0.42
LIMS1-215ENST00000544547 SPINK9Q5DT21 86 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 Q6ZS52 159 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 BMPERQ8N8U9 685 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 IFI44Q8TCB0 444 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 STARD4Q96DR4 205 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 NBASA2RRP1 2371 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 TANC1Q9C0D5 1861 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 CXCL13O43927 109 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 SLC38A11Q08AI6 406 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 CDCP2Q5VXM1 449 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 TP53RKQ96S44 253 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 G6PC2Q9NQR9 355 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 RPH3ALQ9UNE2 315 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 ALG1L2C9J202 215 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 ENSAO43768 121 aaKnown RBP12.43□□□□□ -0.42
LIMS1-215ENST00000544547 GLB1P16278 677 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 S100A7P31151 101 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 ERVFC1-1P60608 527 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 OR5AU1Q8NGC0 362 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 ASB10Q8WXI3 467 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 ST8SIA1Q92185 356 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 CCL28Q9NRJ3 127 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 IGHV5-51A0A0C4DH38 117 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 GRIFINA4D1Z8 144 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 MELTFP08582 738 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 ZNF17P17021 662 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 IZUMO4Q1ZYL8 232 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 MRGPRGQ86SM5 289 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 OR10G4Q8NGN3 311 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 OR10G9Q8NGN4 311 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 OR10G7Q8NGN6 311 aa12.43□□□□□ -0.42
LIMS1-215ENST00000544547 MARS2Q96GW9 593 aaKnown RBP12.43□□□□□ -0.42
LIMS1-215ENST00000544547 SPTY2D1-AS1A0A0U1RR47 76 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 LMO7DNF2Z398 122 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 HSBP1O75506 76 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 EFEMP2O95967 443 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 B4GALT1P15291 398 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 VDAC1P21796 283 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 C6orf15Q6UXA7 325 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-215ENST00000544547 ZNF331Q9NQX6 463 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-215ENST00000544547 P4HTMQ9NXG6 502 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 FOXJ2Q9P0K8 574 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 GABRG2P18507 467 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 TMEM50BP56557 158 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 RTP5Q14D33 572 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 NEIL1Q96FI4 390 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-215ENST00000544547 RNF122Q9H9V4 155 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 SLC7A10Q9NS82 523 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 SLC35D1Q9NTN3 355 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 STARD10Q9Y365 291 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 SCN5AQ14524 2016 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 CRYM-AS1A6NIL9 109 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 ZNF658BQ4V348 819 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-215ENST00000544547 SPEM1Q8N4L4 309 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 TMEM204Q9BSN7 226 aa12.42□□□□□ -0.42
LIMS1-215ENST00000544547 DIDO1Q9BTC0 2240 aaKnown RBP12.42□□□□□ -0.42
LIMS1-215ENST00000544547 INTS1Q8N201 2190 aaKnown RBP12.42□□□□□ -0.42
LIMS1-215ENST00000544547 DOCK9Q9BZ29 2069 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 DBX1A6NMT0 343 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 TMEM14DPA8MWL7 114 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 DHHO43323 396 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 KIR2DL1P43626 348 aaPredicted RBP12.41□□□□□ -0.42
LIMS1-215ENST00000544547 HINT1P49773 126 aaPredicted RBP12.41□□□□□ -0.42
LIMS1-215ENST00000544547 ZNF816Q0VGE8 651 aaPredicted RBP12.41□□□□□ -0.42
LIMS1-215ENST00000544547 CEBPEQ15744 281 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 SMIM15Q7Z3B0 74 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 C1QL2Q7Z5L3 287 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 ADPRHL1Q8NDY3 354 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 SGMS2Q8NHU3 365 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 DEFB127Q9H1M4 99 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 SEBOXQ9HB31 216 aaPredicted RBP12.41□□□□□ -0.42
LIMS1-215ENST00000544547 AQP7P3A6NL99 342 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 CDS2O95674 445 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 MDH2P40926 338 aaKnown RBP12.41□□□□□ -0.42
LIMS1-215ENST00000544547 OR4X1Q8NH49 305 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 H1FXQ92522 213 aaKnown RBP12.41□□□□□ -0.42
LIMS1-215ENST00000544547 RAB40CQ96S21 281 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 BET1LQ9NYM9 111 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 B3GAT1Q9P2W7 334 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 GYPAP02724 150 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 SMAD4Q13485 552 aaKnown RBP12.41□□□□□ -0.42
LIMS1-215ENST00000544547 OR8B8Q15620 311 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 LHFPL2Q6ZUX7 228 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 DAZAP1Q96EP5 407 aaKnown RBP12.41□□□□□ -0.42
LIMS1-215ENST00000544547 OXGR1Q96P68 337 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 ALKBH3Q96Q83 286 aaPredicted RBP12.41□□□□□ -0.42
LIMS1-215ENST00000544547 HDGFL3Q9Y3E1 203 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 TFPI2P48307 235 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 TCL1AP56279 114 aa12.41□□□□□ -0.42
LIMS1-215ENST00000544547 NUTF2P61970 127 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms