RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 CXCL1P09341 107 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 TMEM225BP0DP42 221 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 FGF7P21781 194 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 CTSSP25774 331 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 OTX1P32242 354 aaPredicted RBP12.91□□□□□ -0.34
CHFR-223ENST00000544268 LHX2P50458 406 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 MTCP1P56278 107 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 S100A10P60903 97 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 SRYQ05066 204 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 RNFT1Q5M7Z0 435 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 AKR1C8PQ5T2L2 129 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 IGFL2Q6UWQ7 119 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 Q8WTZ3 238 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 ABHD3Q8WU67 409 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 PACRGQ96M98 296 aaPredicted RBP12.91□□□□□ -0.34
CHFR-223ENST00000544268 SMDT1Q9H4I9 107 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 SIRT7Q9NRC8 400 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 OSGIN2Q9Y236 505 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 MEMO1Q9Y316 297 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 GOLT1BQ9Y3E0 138 aa12.91□□□□□ -0.34
CHFR-223ENST00000544268 DSPP15924 2871 aaKnown RBP12.9□□□□□ -0.34
CHFR-223ENST00000544268 ACACAQ13085 2346 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 SMCO3A2RU48 225 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 PHOX2AO14813 284 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 C9orf135Q5VTT2 229 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 OR2T2Q6IF00 324 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 LHFPL1Q86WI0 220 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 TMEM178AQ8NBL3 297 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 FAM122AQ96E09 287 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 ARV1Q9H2C2 271 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 K7EPK0 472 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 SCGNO76038 276 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 SEC11BP0C7V7 166 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 ZNF32P17041 273 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 LMO1P25800 156 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 FCGR2CP31995 323 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 PTGER4P35408 488 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 CLDN18P56856 261 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 HIST1H3AP68431 136 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 PMP22Q01453 160 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 JOSD1Q15040 202 aaPredicted RBP12.9□□□□□ -0.34
CHFR-223ENST00000544268 TMEM95Q3KNT9 176 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 PIGYQ3MUY2 71 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 FAM71E2Q8N5Q1 922 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 Q8NFD4 153 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 HPSE2Q8WWQ2 592 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 NUDT16L1Q9BRJ7 211 aaKnown RBP12.9□□□□□ -0.34
CHFR-223ENST00000544268 FBXO7Q9Y3I1 522 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 LIPGQ9Y5X9 500 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 SPTBN4Q9H254 2564 aa12.9□□□□□ -0.34
CHFR-223ENST00000544268 NBEAQ8NFP9 2946 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 A0A0U1RQV5 110 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 FIGNL2A6NMB9 653 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 ZNF727A8MUV8 499 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 C3orf80F5H4A9 247 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 LCATP04180 440 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 CAMLGP49069 296 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 TMEM33P57088 247 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 HNF4GQ14541 408 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 GGNBP1Q5YKI7 109 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 SLC22A25Q6T423 547 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 PEG10Q86TG7 708 aaKnown RBP12.89□□□□□ -0.35
CHFR-223ENST00000544268 SUMF2Q8NBJ7 301 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 SNIP1Q8TAD8 396 aaKnown RBP12.89□□□□□ -0.35
CHFR-223ENST00000544268 R3HDM4Q96D70 268 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 REEP6Q96HR9 211 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 DEFB127Q9H1M4 99 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 PLEKHJ1Q9NW61 149 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 IGKV1-12A0A0C4DH73 117 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 CEACAM18A8MTB9 384 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 DVL1O14640 695 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 SYNGR3O43761 229 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 CEACAM4O75871 244 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 IGKV1D-12P01611 117 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 TRGC2P03986 189 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 CRYGSP22914 178 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 FPR2P25090 351 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 SLC10A1Q14973 349 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 CHRFAM7AQ494W8 412 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 TSPO2Q5TGU0 170 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 FOXL2NBQ6ZUU3 175 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 ZNF664Q8N3J9 261 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 ATG101Q9BSB4 218 aa12.89□□□□□ -0.35
CHFR-223ENST00000544268 ZNF2Q9BSG1 426 aaPredicted RBP12.89□□□□□ -0.35
CHFR-223ENST00000544268 SF3B5Q9BWJ5 86 aaKnown RBP12.89□□□□□ -0.35
CHFR-223ENST00000544268 ZNF716A6NP11 495 aa12.88□□□□□ -0.35
CHFR-223ENST00000544268 CYTIPO60759 359 aa12.88□□□□□ -0.35
CHFR-223ENST00000544268 ZNF708P17019 499 aa12.88□□□□□ -0.35
CHFR-223ENST00000544268 MRPS11P82912 194 aaKnown RBP12.88□□□□□ -0.35
CHFR-223ENST00000544268 SP6Q3SY56 376 aa12.88□□□□□ -0.35
CHFR-223ENST00000544268 LFNGQ8NES3 379 aa12.88□□□□□ -0.35
CHFR-223ENST00000544268 SEMA6DQ8NFY4 1073 aa12.88□□□□□ -0.35
CHFR-223ENST00000544268 HIST1H2BLQ99880 126 aa12.88□□□□□ -0.35
CHFR-223ENST00000544268 PARD6GQ9BYG4 376 aaPredicted RBP12.88□□□□□ -0.35
CHFR-223ENST00000544268 STRAPQ9Y3F4 350 aaKnown RBP12.88□□□□□ -0.35
CHFR-223ENST00000544268 TNRC6AQ8NDV7 1962 aaKnown RBP12.88□□□□□ -0.35
CHFR-223ENST00000544268 LINC00614P0C842 121 aa12.88□□□□□ -0.35
CHFR-223ENST00000544268 TRGC1P0CF51 173 aa12.88□□□□□ -0.35
CHFR-223ENST00000544268 CCL2P13500 99 aa12.88□□□□□ -0.35
CHFR-223ENST00000544268 ZNF25P17030 456 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms