RNA–Protein interactions for RNA: ENST00000542777.1

DDX11-222, Transcript of DEAD/H-box helicase 11, human

TSL 2

Gene DDX11, Length 489 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-222	ENST00000542777	IGHG2	P01859	326 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	SLC6A1	P30531	599 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	SSTR5	P35346	364 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	CD69	Q07108	199 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	RAB40B	Q12829	278 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	ASCL4	Q6XD76	172 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	MOB3B	Q86TA1	216 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	FOXRED2	Q8IWF2	684 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	COMMD1	Q8N668	190 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	SUMF2	Q8NBJ7	301 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	KLHL30-AS1	Q8NEE0	82 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	OR52I1	Q8NGK6	324 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	DPCD	Q9BVM2	203 aa	Predicted RBP	12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	JAM3	Q9BX67	310 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	TAS2R4	Q9NYW5	299 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	ING4	Q9UNL4	249 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	ST3GAL6	Q9Y274	331 aa		12.67	□□□□□ -0.38
DDX11-222	ENST00000542777	HSD17B6	O14756	317 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	CDRT1	O95170	752 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	GAPDH	P04406	335 aa	Known RBP	12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	GZMH	P20718	246 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	VHL	P40337	213 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	GTF2A1	P52655	376 aa	Predicted RBP	12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	ZNF816	Q0VGE8	651 aa	Predicted RBP	12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	EBI3	Q14213	229 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	UNQ9370/PRO34162	Q6UXP9	181 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	STPG2	Q8N412	459 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	FBLIM1	Q8WUP2	373 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	RGP1	Q92546	391 aa	Predicted RBP	12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	P2RX4	Q99571	388 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	VCX	Q9H320	206 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	ZNF581	Q9P0T4	197 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	DNAH9	Q9NYC9	4486 aa		12.66	□□□□□ -0.38
DDX11-222	ENST00000542777	IGHV3-72	A0A0B4J1Y9	119 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	IGHV1-3	A0A0C4DH29	117 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	LINC01548	A6NM66	108 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	NCBP2L	A6PVI3	153 aa	Known RBP	12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	CCRL2	O00421	344 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	OR7C1	O76099	320 aa	Predicted RBP	12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	CD2	P06729	351 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	REG1B	P48304	166 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	ZNF695	Q8IW36	515 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	GPR148	Q8TDV2	347 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	EAF1	Q96JC9	268 aa	Predicted RBP	12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	B9D2	Q9BPU9	175 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	METTL9	Q9H1A3	318 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	IFT22	Q9H7X7	185 aa		12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	MRPS18A	Q9NVS2	196 aa	Known RBP	12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	RPL36	Q9Y3U8	105 aa	Known RBP	12.65	□□□□□ -0.38
DDX11-222	ENST00000542777	COL7A1	Q02388	2944 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	TMEM30CP	A0ZSE6	113 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	CSTB	P04080	98 aa	Known RBP	12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	LIMS3	P0CW19	117 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	LIMS4	P0CW20	117 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	RBM11	P57052	281 aa	Known RBP	12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	KLHL22	Q53GT1	634 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	NHLRC3	Q5JS37	347 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	TEX38	Q6PEX7	206 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	TGIF2LX	Q8IUE1	241 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	C8orf59	Q8N0T1	100 aa	Predicted RBP	12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	OR52M1	Q8NGK5	317 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	OR52N1	Q8NH53	320 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	ARL11	Q969Q4	196 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	DUX3	Q96PT4	197 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	IL36G	Q9NZH8	169 aa		12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	ZMAT5	Q9UDW3	170 aa	Known RBP	12.64	□□□□□ -0.39
DDX11-222	ENST00000542777	C15orf65	H3BRN8	121 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	AP4M1	O00189	453 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	SDCBP	O00560	298 aa	Predicted RBP	12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	GEMIN2	O14893	280 aa	Known RBP	12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	ZNF93	P35789	620 aa	Predicted RBP	12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	DGCR2	P98153	550 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	DCTN2	Q13561	401 aa	Known RBP	12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	PNLIPRP3	Q17RR3	467 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	DDI2	Q5TDH0	399 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	XAF1	Q6GPH4	301 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	RPL22L1	Q6P5R6	122 aa	Known RBP	12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	IZUMO1	Q8IYV9	350 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	LINC00311	Q8N616	119 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	SETD9	Q8NE22	299 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	OR2T10	Q8NGZ9	312 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	UBALD1	Q8TB05	177 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	CCDC107	Q8WV48	283 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	TMEM106A	Q96A25	262 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	S100A13	Q99584	98 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	ABCG5	Q9H222	651 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	VCX3B	Q9H321	246 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	TMEM138	Q9NPI0	162 aa		12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	LIN7C	Q9NUP9	197 aa	Known RBP	12.63	□□□□□ -0.39
DDX11-222	ENST00000542777	IGHV3-43	A0A0B4J1X8	118 aa		12.62	□□□□□ -0.39
DDX11-222	ENST00000542777	CCL24	O00175	119 aa		12.62	□□□□□ -0.39
DDX11-222	ENST00000542777	RPLP1	P05386	114 aa	Known RBP	12.62	□□□□□ -0.39
DDX11-222	ENST00000542777	IGHV3-43D	P0DP04	118 aa		12.62	□□□□□ -0.39
DDX11-222	ENST00000542777	VSIG8	P0DPA2	414 aa		12.62	□□□□□ -0.39
DDX11-222	ENST00000542777	SERPINA2	P20848	420 aa		12.62	□□□□□ -0.39
DDX11-222	ENST00000542777	MYF6	P23409	242 aa		12.62	□□□□□ -0.39
DDX11-222	ENST00000542777	GPR12	P47775	334 aa		12.62	□□□□□ -0.39
DDX11-222	ENST00000542777	RAB25	P57735	213 aa		12.62	□□□□□ -0.39
DDX11-222	ENST00000542777	PPP3R1	P63098	170 aa		12.62	□□□□□ -0.39
DDX11-222	ENST00000542777	CCDC58	Q4VC31	144 aa		12.62	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms