RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 MMP9P14780 707 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 MNDAP41218 407 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 PNLIPRP3Q17RR3 467 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 LAX1Q8IWV1 398 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 C11orf42Q8N5U0 333 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 Q8N7P7 452 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 HDHD3Q9BSH5 251 aaPredicted RBP14.06□□□□□ -0.16
LIG1-204ENST00000542460 PCGF1Q9BSM1 259 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 METTL8Q9H825 291 aaKnown RBP14.06□□□□□ -0.16
LIG1-204ENST00000542460 MBNL3Q9NUK0 354 aaKnown RBP14.06□□□□□ -0.16
LIG1-204ENST00000542460 TMEM160Q9NX00 188 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 OPN4Q9UHM6 478 aa14.06□□□□□ -0.16
LIG1-204ENST00000542460 TRAV39A0A0B4J263 110 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 KBTBD11-OT1A0A1B0GTJ5 212 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 TMEM235A6NFC5 223 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 ORC5O43913 435 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 AVPP01185 164 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 MELTFP08582 738 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 RCC1P18754 421 aaPredicted RBP14.05□□□□□ -0.16
LIG1-204ENST00000542460 TALDO1P37837 337 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 PITPNAQ00169 270 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 C6orf183Q5T699 404 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 TRAT1Q6PIZ9 186 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 ZNF554Q86TJ5 538 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 IZUMO1Q8IYV9 350 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 DTX3Q8N9I9 347 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 AUNIPQ9H7T9 357 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 UNKLQ9H9P5 680 aaKnown RBP14.05□□□□□ -0.16
LIG1-204ENST00000542460 CALYQ9NYX4 217 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 KCNIP1Q9NZI2 227 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 ELF5Q9UKW6 265 aaPredicted RBP14.05□□□□□ -0.16
LIG1-204ENST00000542460 PRTN3P24158 256 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 TAS2R20P59543 309 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 GNG2P59768 71 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 C17orf58Q2M2W7 97 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 ZNF880Q6PDB4 577 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 HEPN1Q6WQI6 88 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 MOB1BQ7L9L4 216 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 VMO1Q7Z5L0 202 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 TEX29Q8N6K0 151 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 UPRTQ96BW1 309 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 TBX15Q96SF7 602 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 LINC00574Q9H8X3 128 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 RAB9BQ9NP90 201 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 EXTL2Q9UBQ6 330 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 MGAT4AQ9UM21 535 aa14.05□□□□□ -0.16
LIG1-204ENST00000542460 MRPS7Q9Y2R9 242 aaKnown RBP14.05□□□□□ -0.16
LIG1-204ENST00000542460 CLPXO76031 633 aa14.04□□□□□ -0.16
LIG1-204ENST00000542460 TPPPO94811 219 aa14.04□□□□□ -0.16
LIG1-204ENST00000542460 IGHV1-8P0DP01 117 aa14.04□□□□□ -0.16
LIG1-204ENST00000542460 S100A5P33763 92 aa14.04□□□□□ -0.16
LIG1-204ENST00000542460 ERVFRD-1P60508 538 aa14.04□□□□□ -0.16
LIG1-204ENST00000542460 FAM120AOSQ5T036 256 aa14.04□□□□□ -0.16
LIG1-204ENST00000542460 C1orf229Q6ZS94 237 aaPredicted RBP14.04□□□□□ -0.16
LIG1-204ENST00000542460 SETD6Q8TBK2 473 aa14.04□□□□□ -0.16
LIG1-204ENST00000542460 ARL11Q969Q4 196 aa14.04□□□□□ -0.16
LIG1-204ENST00000542460 DIRAS2Q96HU8 199 aa14.04□□□□□ -0.16
LIG1-204ENST00000542460 C12orf77C9JDV5 145 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 NPIPB11E5RHQ5 1161 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 SPINT2O43291 252 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 HLA-DQB1P01920 261 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 TNFSF8P32971 234 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 SSTR5P35346 364 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 CNPY1Q3B7I2 92 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 CNIH2Q6PI25 160 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 Q71RC1 249 aaPredicted RBP14.03□□□□□ -0.16
LIG1-204ENST00000542460 OR10A7Q8NGE5 316 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 RFESDQ8TAC1 157 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 NUDCD2Q8WVJ2 157 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 TAF9BQ9HBM6 251 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 Q9N2K0 584 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 SIRT7Q9NRC8 400 aa14.03□□□□□ -0.16
LIG1-204ENST00000542460 NIPBLQ6KC79 2804 aaeCLIP14.02□□□□□ -0.16
LIG1-204ENST00000542460 C15orf65H3BRN8 121 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 FCGR3AP08637 254 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 HNF1AP20823 631 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 OMGP23515 440 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 DTYMKP23919 212 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 SRSF7Q16629 238 aaKnown RBP eCLIP14.02□□□□□ -0.16
LIG1-204ENST00000542460 NCR3LG1Q68D85 454 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 OR52W1Q6IF63 320 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 Q6ZPA2 131 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 NANPQ8TBE9 248 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 C15orf40Q8WUR7 153 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 TNFRSF14Q92956 283 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 HEXA-AS1Q9H8Q6 139 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 SESN1Q9Y6P5 492 aa14.02□□□□□ -0.16
LIG1-204ENST00000542460 TLN2Q9Y4G6 2542 aa14.02□□□□□ -0.17
LIG1-204ENST00000542460 SSX5O60225 188 aa14.01□□□□□ -0.17
LIG1-204ENST00000542460 MMP23AO75900 390 aa14.01□□□□□ -0.17
LIG1-204ENST00000542460 HBZP02008 142 aa14.01□□□□□ -0.17
LIG1-204ENST00000542460 PTHLHP12272 177 aa14.01□□□□□ -0.17
LIG1-204ENST00000542460 PRSS3P35030 304 aa14.01□□□□□ -0.17
LIG1-204ENST00000542460 PRAMEF5Q5TYX0 476 aa14.01□□□□□ -0.17
LIG1-204ENST00000542460 BAIAP2L2Q6UXY1 529 aa14.01□□□□□ -0.17
LIG1-204ENST00000542460 ZNF782Q6ZMW2 699 aaPredicted RBP14.01□□□□□ -0.17
LIG1-204ENST00000542460 PRR18Q8N4B5 295 aa14.01□□□□□ -0.17
LIG1-204ENST00000542460 LHX4Q969G2 390 aa14.01□□□□□ -0.17
LIG1-204ENST00000542460 KIRREL1Q96J84 757 aa14.01□□□□□ -0.17
LIG1-204ENST00000542460 IDI2-AS1Q9NZ38 188 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms