RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 ANKRD30BLA7E2S9 258 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 MMP7P09237 267 aaPredicted RBP11.59□□□□□ -0.55
PTPN1-202ENST00000541713 APLNRP35414 380 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 FABP6P51161 128 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 CCL11P51671 97 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 CLN3Q13286 438 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 SPANXN5Q5MJ07 72 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 GPR157Q5UAW9 335 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 KCNE4Q8WWG9 221 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 INTS12Q96CB8 462 aaKnown RBP11.59□□□□□ -0.55
PTPN1-202ENST00000541713 OR2J1Q9GZK6 312 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 NDRG3Q9UGV2 375 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 TACC2O95359 2948 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 APC2O95996 2303 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 GPR137BO60478 399 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 MT-CO3P00414 261 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 MPV17LQ2QL34 196 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 TMEM164Q5U3C3 297 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 BTNL3Q6UXE8 466 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 MOB3AQ96BX8 217 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 SF3B5Q9BWJ5 86 aaKnown RBP11.59□□□□□ -0.55
PTPN1-202ENST00000541713 ANAPC10Q9UM13 185 aa11.59□□□□□ -0.55
PTPN1-202ENST00000541713 C1orf196B1AJZ1 125 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 WNT9BO14905 357 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 DEGS1O15121 323 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 KRASP01116 189 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 MEOX1P50221 254 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 ZNF674Q2M3X9 581 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 B4GALT7Q9UBV7 327 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 CACFD1Q9UGQ2 172 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 TAAR5O14804 337 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 ZNF816Q0VGE8 651 aaPredicted RBP11.58□□□□□ -0.56
PTPN1-202ENST00000541713 SSPNQ14714 243 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 SURF2Q15527 256 aaPredicted RBP11.58□□□□□ -0.56
PTPN1-202ENST00000541713 DCAF10Q5QP82 559 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 MDP1Q86V88 176 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 CMTM1Q8IZ96 169 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 TMEM252Q8N6L7 170 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 OR10J5Q8NHC4 309 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 NUDT16L1Q9BRJ7 211 aaKnown RBP11.58□□□□□ -0.56
PTPN1-202ENST00000541713 STRADBQ9C0K7 418 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 SMCO4Q9NRQ5 59 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 TINAGQ9UJW2 476 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 ZNF318Q5VUA4 2279 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 CEACAM18A8MTB9 384 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 LINC01387J3KSC0 135 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 FABP9Q0Z7S8 132 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 GUCD1Q96NT3 240 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 PLEKHA2Q9HB19 425 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 TREM2Q9NZC2 230 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 CACNG5Q9UF02 275 aa11.58□□□□□ -0.56
PTPN1-202ENST00000541713 ABCA4P78363 2273 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 H2AFB1P0C5Y9 115 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 SNCAP37840 140 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 ALDH3B1P43353 468 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 VHLLQ6RSH7 139 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 FIP1L1Q6UN15 594 aaKnown RBP11.57□□□□□ -0.56
PTPN1-202ENST00000541713 OR10V1Q8NGI7 309 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 ADGRG7Q96K78 797 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 SH2D2AQ9NP31 389 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 OBP2BQ9NPH6 170 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 BIN3Q9NQY0 253 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 KALRNO60229 2985 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 CYTIPO60759 359 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 NXPH2O95156 264 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 LHX2P50458 406 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 GFRA1P56159 465 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 RAB5BP61020 215 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 EDDM3AQ14507 147 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 DAZAP2Q15038 168 aaPredicted RBP11.57□□□□□ -0.56
PTPN1-202ENST00000541713 AKR1C8PQ5T2L2 129 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 SAT2Q96F10 170 aaPredicted RBP11.57□□□□□ -0.56
PTPN1-202ENST00000541713 MSL2Q9HCI7 577 aa11.57□□□□□ -0.56
PTPN1-202ENST00000541713 INTS1Q8N201 2190 aaKnown RBP11.57□□□□□ -0.56
PTPN1-202ENST00000541713 RPL36A-HNRNPH2H7BZ11 118 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 DTYMKP23919 212 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 WNT5AP41221 380 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 TESK1Q15569 626 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 RNFT1Q5M7Z0 435 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 DHRS7BQ6IAN0 325 aaPredicted RBP11.56□□□□□ -0.56
PTPN1-202ENST00000541713 Q6ZRM9 215 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 SSX9Q7RTT3 188 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 SELENOHQ8IZQ5 122 aaKnown RBP11.56□□□□□ -0.56
PTPN1-202ENST00000541713 HIST1H2BAQ96A08 127 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 TMEM222Q9H0R3 208 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 VSIRQ9H7M9 311 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 TUBD1Q9UJT1 453 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 COLCA2A8K830 154 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 TRDCB7Z8K6 153 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 TUBG1P23258 451 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 P2RY1P47900 373 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 RAB11AP62491 216 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 EIF2S3LQ2VIR3 472 aaKnown RBP11.56□□□□□ -0.56
PTPN1-202ENST00000541713 CYB561D1Q8N8Q1 229 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 NECAP1Q8NC96 275 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 BOD1Q96IK1 185 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 C18orf12Q96KH6 178 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 FAM173AQ9BQD7 235 aa11.56□□□□□ -0.56
PTPN1-202ENST00000541713 ZNF703Q9H7S9 590 aaPredicted RBP11.56□□□□□ -0.56
PTPN1-202ENST00000541713 NIT2Q9NQR4 276 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms