RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 IFT22Q9H7X7 185 aa11.15□□□□□ -0.63
SNHG1-213ENST00000540725 IL36GQ9NZH8 169 aa11.15□□□□□ -0.63
SNHG1-213ENST00000540725 ING4Q9UNL4 249 aa11.15□□□□□ -0.63
SNHG1-213ENST00000540725 STAB2Q8WWQ8 2551 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 IGHV3-72A0A0B4J1Y9 119 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 IGHV1-3A0A0C4DH29 117 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 LOC100130705A0A1B0GUX0 176 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 TMEM30CPA0ZSE6 113 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 CCRL2O00421 344 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 GAPDHP04406 335 aaKnown RBP11.14□□□□□ -0.63
SNHG1-213ENST00000540725 GZMHP20718 246 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 MYCNOSP40205 109 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 REG1BP48304 166 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 CD69Q07108 199 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 EBI3Q14213 229 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 DDI2Q5TDH0 399 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 RPL22L1Q6P5R6 122 aaKnown RBP11.14□□□□□ -0.63
SNHG1-213ENST00000540725 IZUMO1Q8IYV9 350 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 OR52N1Q8NH53 320 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 APH1BQ8WW43 257 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 EAF1Q96JC9 268 aaPredicted RBP11.14□□□□□ -0.63
SNHG1-213ENST00000540725 P2RX4Q99571 388 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 SLC29A1Q99808 456 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 TMEM138Q9NPI0 162 aa11.14□□□□□ -0.63
SNHG1-213ENST00000540725 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.14□□□□□ -0.63
SNHG1-213ENST00000540725 SORL1Q92673 2214 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 LINC01548A6NM66 108 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 NCBP2LA6PVI3 153 aaKnown RBP11.13□□□□□ -0.63
SNHG1-213ENST00000540725 C15orf65H3BRN8 121 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 EBAG9O00559 213 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 GEMIN2O14893 280 aaKnown RBP11.13□□□□□ -0.63
SNHG1-213ENST00000540725 CSTBP04080 98 aaKnown RBP11.13□□□□□ -0.63
SNHG1-213ENST00000540725 SERPINA2P20848 420 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 ZNF93P35789 620 aaPredicted RBP11.13□□□□□ -0.63
SNHG1-213ENST00000540725 PPP3R1P63098 170 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 CCDC58Q4VC31 144 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 LINC00596Q86U02 117 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 TGIF2LXQ8IUE1 241 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 ZNF695Q8IW36 515 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 LINC00311Q8N616 119 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 Q8N6K4 173 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 OR52M1Q8NGK5 317 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 UBALD1Q8TB05 177 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 ARL11Q969Q4 196 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 S100A13Q99584 98 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 B9D2Q9BPU9 175 aa11.13□□□□□ -0.63
SNHG1-213ENST00000540725 FGF20Q9NP95 211 aaPredicted RBP11.13□□□□□ -0.63
SNHG1-213ENST00000540725 H0YHG0 523 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 AP4M1O00189 453 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 SDCBPO00560 298 aaPredicted RBP11.12□□□□□ -0.63
SNHG1-213ENST00000540725 BDKRB2P30411 391 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 GPR12P47775 334 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 ETV1P50549 477 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 SMN1Q16637 294 aaKnown RBP11.12□□□□□ -0.63
SNHG1-213ENST00000540725 MPV17LQ2QL34 196 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 ATAD3CQ5T2N8 411 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 OR2G6Q5TZ20 316 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 FAM53AQ6NSI3 398 aaPredicted RBP11.12□□□□□ -0.63
SNHG1-213ENST00000540725 OR2T10Q8NGZ9 312 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 NEK7Q8TDX7 302 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 CCDC107Q8WV48 283 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 ORAI1Q96D31 301 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 DUX3Q96PT4 197 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 ABCG5Q9H222 651 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 LIN7CQ9NUP9 197 aaKnown RBP11.12□□□□□ -0.63
SNHG1-213ENST00000540725 PAK1IP1Q9NWT1 392 aaPredicted RBP11.12□□□□□ -0.63
SNHG1-213ENST00000540725 GFOD1Q9NXC2 390 aa11.12□□□□□ -0.63
SNHG1-213ENST00000540725 IGHV3-43A0A0B4J1X8 118 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 A0A1W2PP11 408 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 ORC5O43913 435 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 WBP4O75554 376 aaKnown RBP11.11□□□□□ -0.63
SNHG1-213ENST00000540725 IGHV3-43DP0DP04 118 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 IL3RAP26951 378 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 DCTN2Q13561 401 aaKnown RBP11.11□□□□□ -0.63
SNHG1-213ENST00000540725 PNLIPRP3Q17RR3 467 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 SLC22A6Q4U2R8 563 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 TEX38Q6PEX7 206 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 UNQ9370/PRO34162Q6UXP9 181 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 TMPRSS11AQ6ZMR5 421 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 ZNF497Q6ZNH5 498 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 C8orf31Q8N9H6 132 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 Q8N9W7 124 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 TMEM104Q8NE00 496 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 OR13C5Q8NGS8 318 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 RTN4IP1Q8WWV3 396 aaPredicted RBP11.11□□□□□ -0.63
SNHG1-213ENST00000540725 ST6GALNAC6Q969X2 333 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 RAX2Q96IS3 184 aa11.11□□□□□ -0.63
SNHG1-213ENST00000540725 ZNF184Q99676 751 aaPredicted RBP11.11□□□□□ -0.63
SNHG1-213ENST00000540725 SIRT4Q9Y6E7 314 aaPredicted RBP11.11□□□□□ -0.63
SNHG1-213ENST00000540725 AIPO00170 330 aa11.1□□□□□ -0.63
SNHG1-213ENST00000540725 CCL24O00175 119 aa11.1□□□□□ -0.63
SNHG1-213ENST00000540725 ZNF780AO75290 641 aaPredicted RBP11.1□□□□□ -0.63
SNHG1-213ENST00000540725 MT-ND4P03905 459 aa11.1□□□□□ -0.63
SNHG1-213ENST00000540725 RPLP1P05386 114 aaKnown RBP11.1□□□□□ -0.63
SNHG1-213ENST00000540725 DCKP27707 260 aa11.1□□□□□ -0.63
SNHG1-213ENST00000540725 CD1BP29016 333 aa11.1□□□□□ -0.63
SNHG1-213ENST00000540725 RAB25P57735 213 aa11.1□□□□□ -0.63
SNHG1-213ENST00000540725 DGCR2P98153 550 aa11.1□□□□□ -0.63
SNHG1-213ENST00000540725 RIPK1Q13546 671 aa11.1□□□□□ -0.63
SNHG1-213ENST00000540725 CXorf66Q5JRM2 361 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms