RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CEBPZOSA8MTT3 80 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF253O75346 499 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 WNT2P09544 360 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 LRRC73Q5JTD7 316 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 WDR38Q5JTN6 314 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 BVES-AS1Q5T3Y7 98 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 NEUROG1Q92886 237 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 EAF1Q96JC9 268 aaPredicted RBP8.17□□□□□ -1.1
CLIP1-214ENST00000540539 C4orf45Q96LM5 186 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 LRRC3BQ96PB8 259 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 TSPAN32Q96QS1 320 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 P2RX4Q99571 388 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 LRRC61Q9BV99 259 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 VN1R1Q9GZP7 353 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 TAS2R4Q9NYW5 299 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 WASHC3Q9Y3C0 194 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 MED31Q9Y3C7 131 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 CENPVL1A0A0U1RR11 272 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 GAGE10A6NGK3 116 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 HS3ST1O14792 307 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 KBTBD11O94819 623 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 GPX1P07203 203 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 PF4V1P10720 104 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 RPS24P62847 133 aaKnown RBP8.17□□□□□ -1.1
CLIP1-214ENST00000540539 SPIN3Q5JUX0 258 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 C9orf135Q5VTT2 229 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 FAM46BQ96A09 425 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 ANAPC16Q96DE5 110 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 FOXN4Q96NZ1 517 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 EFCAB11Q9BUY7 163 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 SRA1Q9HD15 236 aaKnown RBP8.17□□□□□ -1.1
CLIP1-214ENST00000540539 NRN1Q9NPD7 142 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 B3GALT5Q9Y2C3 310 aa8.17□□□□□ -1.1
CLIP1-214ENST00000540539 A0A1B0GW15 77 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 DPRXA6NFQ7 191 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF732B4DXR9 585 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 PITX3O75364 302 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 HLA-HP01893 362 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 CATP04040 527 aaKnown RBP8.16□□□□□ -1.1
CLIP1-214ENST00000540539 H2BFMP0C1H6 154 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 CRISP2P16562 243 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 GATA3P23771 443 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 NCBP2P52298 156 aaKnown RBP eCLIP8.16□□□□□ -1.1
CLIP1-214ENST00000540539 CLDN17P56750 224 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 TBPL1P62380 186 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 MFGE8Q08431 387 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-214ENST00000540539 OR1Q1Q15612 314 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF787Q6DD87 383 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 BAGE3Q86Y29 109 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 BAGE2Q86Y30 109 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 OR5H2Q8NGV7 314 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 CYYR1Q96J86 154 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 ZDHHC11Q9H8X9 412 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 PEF1Q9UBV8 284 aaKnown RBP8.16□□□□□ -1.1
CLIP1-214ENST00000540539 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-214ENST00000540539 DUXBA0A1W2PPF3 345 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 CELA3BP08861 270 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 CCL2P13500 99 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 NPPBP16860 134 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 SFTPDP35247 375 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF133P52736 654 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-214ENST00000540539 LCN6P62502 163 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 UNC119Q13432 240 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 IL13RA2Q14627 380 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 MLC1Q15049 377 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 OR2AE1Q8NHA4 323 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 PLPPR1Q8TBJ4 325 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 WDR34Q96EX3 536 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 MRAP2Q96G30 205 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 OBP2AQ9NY56 170 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 WNT6Q9Y6F9 365 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.16□□□□□ -1.1
CLIP1-214ENST00000540539 IGSF23A1L1A6 192 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF716A6NP11 495 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 SDCBPO00560 298 aaPredicted RBP8.16□□□□□ -1.1
CLIP1-214ENST00000540539 TBL1XO60907 577 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 NUDT3O95989 172 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 TTRP02766 147 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 C1QTNF9P0C862 333 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 C3orf79P0CE67 100 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 SMIM17P0DL12 118 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 OMGP23515 440 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 RELBQ01201 579 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 HSD52Q0P140 79 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF154Q13106 437 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.16□□□□□ -1.1
CLIP1-214ENST00000540539 PARM1Q6UWI2 310 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF788Q6ZQV5 615 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 LHFPL2Q6ZUX7 228 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 ZNF765Q7L2R6 523 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 FGF14Q92915 247 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 EMG1Q92979 244 aaKnown RBP8.16□□□□□ -1.1
CLIP1-214ENST00000540539 FER1L6-AS2Q96M78 137 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 TNFRSF18Q9Y5U5 241 aa8.16□□□□□ -1.1
CLIP1-214ENST00000540539 COL4A3Q01955 1670 aa8.15□□□□□ -1.1
CLIP1-214ENST00000540539 FAM24AA6NFZ4 105 aa8.15□□□□□ -1.1
CLIP1-214ENST00000540539 TMEM202A6NGA9 273 aa8.15□□□□□ -1.1
CLIP1-214ENST00000540539 SHISA7A6NL88 538 aa8.15□□□□□ -1.1
CLIP1-214ENST00000540539 M0R1X1 148 aa8.15□□□□□ -1.1
CLIP1-214ENST00000540539 HPNP05981 417 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms