RNA–Protein interactions for RNA: ENST00000539843.5

UBE3B-211, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 2

Gene UBE3B, Length 586 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-211ENST00000539843 A0A1W2PPI3 338 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 NCBP2LA6PVI3 153 aaKnown RBP12.14□□□□□ -0.47
UBE3B-211ENST00000539843 SDCBPO00560 298 aaPredicted RBP12.14□□□□□ -0.47
UBE3B-211ENST00000539843 TXNL1O43396 289 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 RRP9O43818 475 aaKnown RBP12.14□□□□□ -0.47
UBE3B-211ENST00000539843 CDRT1O95170 752 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 GTF2A1P52655 376 aaPredicted RBP12.14□□□□□ -0.47
UBE3B-211ENST00000539843 GP2P55259 537 aaKnown RBP12.14□□□□□ -0.47
UBE3B-211ENST00000539843 RPL23AP62750 156 aaKnown RBP12.14□□□□□ -0.47
UBE3B-211ENST00000539843 ZNF816Q0VGE8 651 aaPredicted RBP12.14□□□□□ -0.47
UBE3B-211ENST00000539843 TMEM30BQ3MIR4 351 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 ASCL4Q6XD76 172 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 ZNF329Q86UD4 541 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 PQLC1Q8N2U9 271 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 OR52M1Q8NGK5 317 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 OR2T10Q8NGZ9 312 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 PLPPR1Q8TBJ4 325 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 ARL11Q969Q4 196 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 SMIM19Q96E16 107 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 S100A14Q9HCY8 104 aa12.14□□□□□ -0.47
UBE3B-211ENST00000539843 FGF20Q9NP95 211 aaPredicted RBP12.14□□□□□ -0.47
UBE3B-211ENST00000539843 SMPD3Q9NY59 655 aaPredicted RBP12.14□□□□□ -0.47
UBE3B-211ENST00000539843 EXOSC1Q9Y3B2 195 aaKnown RBP12.14□□□□□ -0.47
UBE3B-211ENST00000539843 KIAA2026Q5HYC2 2103 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 AIPO00170 330 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 AP4M1O00189 453 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 SPINT2O43291 252 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 LIMS3P0CW19 117 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 LIMS4P0CW20 117 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 MYCNOSP40205 109 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 Q3ZCU0 254 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 TEX38Q6PEX7 206 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 LINC00482Q8N8I6 264 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 SETD9Q8NE22 299 aa12.13□□□□□ -0.47
UBE3B-211ENST00000539843 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.13□□□□□ -0.47
UBE3B-211ENST00000539843 IGHV1-3A0A0C4DH29 117 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 MCRIP1C9JLW8 97 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 GEMIN2O14893 280 aaKnown RBP12.12□□□□□ -0.47
UBE3B-211ENST00000539843 ORC5O43913 435 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 BAG2O95816 211 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 IGHG2P01859 326 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 SLC22A6Q4U2R8 563 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 YIF1BQ5BJH7 314 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 VAX1Q5SQQ9 334 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 C6orf183Q5T699 404 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 TRAT1Q6PIZ9 186 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 C10orf99Q6UWK7 81 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 OR2W3Q7Z3T1 314 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 TGIF2LXQ8IUE1 241 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 MRPL41Q8IXM3 137 aaKnown RBP12.12□□□□□ -0.47
UBE3B-211ENST00000539843 IZUMO1Q8IYV9 350 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 C8orf31Q8N9H6 132 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 KLHL30-AS1Q8NEE0 82 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 OR8H1Q8NGG4 311 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 MRPS24Q96EL2 167 aaKnown RBP12.12□□□□□ -0.47
UBE3B-211ENST00000539843 ZNF184Q99676 751 aaPredicted RBP12.12□□□□□ -0.47
UBE3B-211ENST00000539843 SLC29A1Q99808 456 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 RASL11BQ9BPW5 248 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 LIN7CQ9NUP9 197 aaKnown RBP12.12□□□□□ -0.47
UBE3B-211ENST00000539843 BABAM2Q9NXR7 383 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 GNG12Q9UBI6 72 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 TRAPPC2LQ9UL33 140 aa12.12□□□□□ -0.47
UBE3B-211ENST00000539843 A0A1W2PPE3 182 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 REG1BP48304 166 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 THBS3P49746 956 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 TAS2R43P59537 309 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 CD69Q07108 199 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 Q499Y3 187 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 CXorf66Q5JRM2 361 aaPredicted RBP12.11□□□□□ -0.47
UBE3B-211ENST00000539843 TTC23Q5W5X9 447 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 ZNF695Q8IW36 515 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 STPG2Q8N412 459 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 JAGN1Q8N5M9 183 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 LINC00311Q8N616 119 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 CCDC107Q8WV48 283 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 APH1BQ8WW43 257 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 RGP1Q92546 391 aaPredicted RBP12.11□□□□□ -0.47
UBE3B-211ENST00000539843 THRSPQ92748 146 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 NOL4LQ96MY1 436 aaPredicted RBP12.11□□□□□ -0.47
UBE3B-211ENST00000539843 C8orf4Q9NR00 106 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 GFOD1Q9NXC2 390 aa12.11□□□□□ -0.47
UBE3B-211ENST00000539843 DIMT1Q9UNQ2 313 aaKnown RBP12.11□□□□□ -0.47
UBE3B-211ENST00000539843 TRAV39A0A0B4J263 110 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 K7EIL1 84 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 MOSP00540 346 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 VDAC1P21796 283 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 CD1BP29016 333 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 HOXD3P31249 432 aaPredicted RBP12.1□□□□□ -0.47
UBE3B-211ENST00000539843 ETV1P50549 477 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 RAB25P57735 213 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 EBI3Q14213 229 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 DIAPH2-AS1Q14236 149 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 PNLIPRP3Q17RR3 467 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 UTF1Q5T230 341 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 OR2G6Q5TZ20 316 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 AWAT2Q6E213 333 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 C8orf86Q6ZUL3 223 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 TMEM80Q96HE8 168 aa12.1□□□□□ -0.47
UBE3B-211ENST00000539843 EAF1Q96JC9 268 aaPredicted RBP12.1□□□□□ -0.47
UBE3B-211ENST00000539843 ETAA1Q9NY74 926 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms