RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 PCDH15Q96QU1 1955 aa3.22□□□□□ -1.89
MCF2-210ENST00000536274 TNRC6AQ8NDV7 1962 aaKnown RBP3.21□□□□□ -1.89
MCF2-210ENST00000536274 TRBV5-7A0A0A0MS05 114 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 NSG1A0A0A6YYJ2 146 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 LOC102723971A0A1B0GUV8 181 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 MAP1LC3B2A6NCE7 125 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 C1QTNF9BB2RNN3 333 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 NPIPA5E9PKD4 350 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 NPIPA3F8WFD2 350 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 AGFG2O95081 481 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 LYPD3O95274 346 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 HLA-DQA2P01906 255 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 GAPDHP04406 335 aaKnown RBP3.21□□□□□ -1.89
MCF2-210ENST00000536274 ZNF43P17038 809 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 CCR2P41597 374 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 UQCRFS1P47985 274 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 THBS3P49746 956 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 FXYD4P59646 89 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 CKS1BP61024 79 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 RPL23P62829 140 aaKnown RBP3.21□□□□□ -1.89
MCF2-210ENST00000536274 PAFAH1B2P68402 229 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 SLC35B1P78383 322 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 EWSR1Q01844 656 aaKnown RBP eCLIP3.21□□□□□ -1.89
MCF2-210ENST00000536274 MEF2CQ06413 473 aaPredicted RBP3.21□□□□□ -1.89
MCF2-210ENST00000536274 ZNF154Q13106 437 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 CDKN3Q16667 212 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 NRN1LQ496H8 165 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 PLAC9Q5JTB6 97 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 ZNF506Q5JVG8 444 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 DCST2Q5T1A1 773 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 ZNF684Q5T5D7 378 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 LINC01590Q5TEZ4 76 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 SPATA31B1PQ5VZV4 182 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 SLC8B1Q6J4K2 584 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 ABHD17CQ6PCB6 329 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 ZNF788Q6ZQV5 615 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 ZNF765Q7L2R6 523 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 ABHD12BQ7Z5M8 362 aaPredicted RBP3.21□□□□□ -1.89
MCF2-210ENST00000536274 TMCO2Q7Z6W1 182 aaPredicted RBP3.21□□□□□ -1.89
MCF2-210ENST00000536274 FER1L6-AS1Q8NA97 138 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 OR2T10Q8NGZ9 312 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 OR4A5Q8NH83 315 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 CXorf40BQ96DE9 158 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 ACY3Q96HD9 319 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 RCHY1Q96PM5 261 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 HINT2Q9BX68 163 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 VN1R3Q9BXE9 311 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 MAP1LC3BQ9GZQ8 125 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 CHRNA10Q9GZZ6 450 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 ELOVL3Q9HB03 270 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 ELL3Q9HB65 397 aaPredicted RBP3.21□□□□□ -1.89
MCF2-210ENST00000536274 AHSPQ9NZD4 102 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 KIAA1456Q9P272 454 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 TAC3Q9UHF0 121 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 PRSS50Q9UI38 385 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 NPIPA1Q9UND3 350 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 PPP1R3CQ9UQK1 317 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 MED31Q9Y3C7 131 aa3.21□□□□□ -1.89
MCF2-210ENST00000536274 WDR1O75083 606 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 CNIH1O95406 144 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 NUDT3O95989 172 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 MT-CO3P00414 261 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 HSPB1P04792 205 aaKnown RBP3.21□□□□□ -1.9
MCF2-210ENST00000536274 PET100P0DJ07 73 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 TCN2P20062 427 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 NTF3P20783 257 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 DRD1P21728 446 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 ANOS1P23352 680 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 S100GP29377 79 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 RBMXP38159 391 aaKnown RBP3.21□□□□□ -1.9
MCF2-210ENST00000536274 GATA4P43694 442 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 SLC6A8P48029 635 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 EMDP50402 254 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 DYNLT3P51808 116 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 SUCLG1P53597 346 aaKnown RBP3.21□□□□□ -1.9
MCF2-210ENST00000536274 PAX2Q02962 417 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 ZNF726P1Q15940 193 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 NNATQ16517 81 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 TMEM241Q24JQ0 296 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 ADGRE4PQ86SQ3 457 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 BAGE3Q86Y29 109 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 BAGE2Q86Y30 109 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 OR5AU1Q8NGC0 362 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 OR5C1Q8NGR4 320 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 FGGYQ96C11 551 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 ABHD17AQ96GS6 310 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 ABHD6Q9BV23 337 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 FOXQ1Q9C009 403 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 LIME1Q9H400 295 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 MBNL1Q9NR56 388 aaKnown RBP3.21□□□□□ -1.9
MCF2-210ENST00000536274 TMEM74BQ9NUR3 256 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 UQCR10Q9UDW1 63 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 TBL2Q9Y4P3 447 aaKnown RBP3.21□□□□□ -1.9
MCF2-210ENST00000536274 FREM3P0C091 2139 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 MYO7BQ6PIF6 2116 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 ZNF816-ZNF321PA0A0X1KG74 233 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 IGLC7A0M8Q6 106 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 G3V4G9 280 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 LATO43561 262 aa3.21□□□□□ -1.9
MCF2-210ENST00000536274 SSSCA1O60232 199 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms