RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 RBMS2Q15434 407 aaKnown RBP4.81□□□□□ -1.64
CD44-237ENST00000534082 LRRC36Q1X8D7 754 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 DEFB135Q30KP9 77 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 CD300EQ496F6 205 aaPredicted RBP4.81□□□□□ -1.64
CD44-237ENST00000534082 SPIN3Q5JUX0 258 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 PYHIN1Q6K0P9 492 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 Q8IYB0 196 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 FAM58AQ8N1B3 248 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 TCTEX1D1Q8N7M0 179 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 OTOSQ8NHW6 89 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 THEM6Q8WUY1 208 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.81□□□□□ -1.64
CD44-237ENST00000534082 MS4A10Q96PG2 267 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 TMEM109Q9BVC6 243 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 OSBPL10Q9BXB5 764 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 PBOV1Q9GZY1 135 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 CST11Q9H112 138 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 FAM206AQ9NX38 181 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 TAS2R1Q9NYW7 299 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 NDUFAF4Q9P032 175 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 APLNQ9ULZ1 77 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 KLHDC2Q9Y2U9 406 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 FAM32AQ9Y421 112 aaKnown RBP4.81□□□□□ -1.64
CD44-237ENST00000534082 CDH10Q9Y6N8 788 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 A3GALT2U3KPV4 340 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 VPS13BQ7Z7G8 4022 aa4.81□□□□□ -1.64
CD44-237ENST00000534082 SRRM2Q9UQ35 2752 aaKnown RBP4.81□□□□□ -1.64
CD44-237ENST00000534082 TMEM269A0A1B0GVZ9 245 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 ANKRD34BA5PLL1 514 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 ACOD1A6NK06 481 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 ZNF785A8K8V0 405 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 IGLL5B9A064 214 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 M0R2N4 97 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 CXCR6O00574 342 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 SELENOFO60613 162 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 PLA2G1BP04054 148 aaKnown RBP4.8□□□□□ -1.64
CD44-237ENST00000534082 CGB3P0DN86 165 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 CGB7P0DN87 165 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 HTR1FP30939 366 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 GSSP48637 474 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 NUDT2P50583 147 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 MECP2P51608 486 aaKnown RBP4.8□□□□□ -1.64
CD44-237ENST00000534082 CRIP2P52943 208 aaPredicted RBP4.8□□□□□ -1.64
CD44-237ENST00000534082 GUCA2BQ16661 112 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 LCE5AQ5TCM9 118 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 Q6ZWC4 215 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 SLC16A13Q7RTY0 426 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 RDH10Q8IZV5 341 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 OR8D4Q8NGM9 314 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 OR13A1Q8NGR1 328 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 RP9Q8TA86 221 aaKnown RBP4.8□□□□□ -1.64
CD44-237ENST00000534082 RFESDQ8TAC1 157 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 BARHL1Q9BZE3 327 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 TINAGL1Q9GZM7 467 aaPredicted RBP4.8□□□□□ -1.64
CD44-237ENST00000534082 MFFQ9GZY8 342 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 LINC00574Q9H8X3 128 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 MED20Q9H944 212 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 ERGIC3Q9Y282 383 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 GSTK1Q9Y2Q3 226 aa4.8□□□□□ -1.64
CD44-237ENST00000534082 MEIKINA0A087WXM9 373 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 TMEM120BA0PK00 339 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 NPIPB11E5RHQ5 1161 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 SH2D1BO14796 132 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 TXNL1O43396 289 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 TTRP02766 147 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 TRGV3P03979 118 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 INAFM2P0DMQ5 153 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 ZNF44P15621 663 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 CTRB1P17538 263 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 IL3RAP26951 378 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 SSTR5P35346 364 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 SCN1BQ07699 218 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 TSPAN31Q12999 210 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 DYRK1AQ13627 763 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 C5orf64Q2M2E5 130 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 ACTBL2Q562R1 376 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 CTRB2Q6GPI1 263 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 RPL13AP3Q6NVV1 102 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 FAHD1Q6P587 224 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 SLC16A12Q6ZSM3 486 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 ZNF565Q8N9K5 539 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 DRAXINQ8NBI3 349 aaPredicted RBP4.79□□□□□ -1.64
CD44-237ENST00000534082 C11orf45Q8TAV5 145 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 DYNLRB2Q8TF09 96 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 ABHD5Q8WTS1 349 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 KRTAP9-3Q9BYQ3 159 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 ANKRD60Q9BZ19 345 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 SLA2Q9H6Q3 261 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 HMG20AQ9NP66 347 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 CNOT2Q9NZN8 540 aaKnown RBP4.79□□□□□ -1.64
CD44-237ENST00000534082 NUFIP1Q9UHK0 495 aaKnown RBP4.79□□□□□ -1.64
CD44-237ENST00000534082 KIF25Q9UIL4 384 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 FBXL7Q9UJT9 491 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 MYRFQ9Y2G1 1151 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 V9GYS6 101 aa4.79□□□□□ -1.64
CD44-237ENST00000534082 C13orf42A0A1B0GVH6 325 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 RIIAD1A6NNX1 92 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 SLC33A1O00400 549 aaPredicted RBP4.78□□□□□ -1.64
CD44-237ENST00000534082 HSPB6O14558 160 aa4.78□□□□□ -1.64
CD44-237ENST00000534082 MRASO14807 208 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms