RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 OR5AC1P0C628 307 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 HLA-GP17693 338 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 GABRR2P28476 465 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 ACOT2P49753 483 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 RGS6P49758 472 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 KRTAP12-4P60329 112 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 SLC35A1P78382 337 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 C2orf54Q08AI8 447 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 NKAIN1Q4KMZ8 207 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 CLEC2AQ6UVW9 174 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 FA2HQ7L5A8 372 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 SLC7A5P1Q8MH63 180 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 PDCL2Q8N4E4 241 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 OR2M7Q8NG81 312 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 LRRC39Q96DD0 335 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 Q96MT0 163 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 NAPGQ99747 312 aaPredicted RBP1.66□□□□□ -2.14
CD44-233ENST00000531141 CHMP4BQ9H444 224 aaKnown RBP1.66□□□□□ -2.14
CD44-233ENST00000531141 RDH14Q9HBH5 336 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 FAM60AQ9NP50 221 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 TMEM100Q9NV29 134 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 ASF1BQ9NVP2 202 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 PEF1Q9UBV8 284 aaKnown RBP1.66□□□□□ -2.14
CD44-233ENST00000531141 DDX19BQ9UMR2 479 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 NOSIPQ9Y314 301 aaKnown RBP1.66□□□□□ -2.14
CD44-233ENST00000531141 ENPP4Q9Y6X5 453 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 ZNF236Q9UL36 1845 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 SPAG17Q6Q759 2223 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 CENPXA8MT69 81 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 DFFAO00273 331 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 TRDMT1O14717 391 aaKnown RBP1.65□□□□□ -2.15
CD44-233ENST00000531141 PLXNB1O43157 2135 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 SNRPAP09012 282 aaKnown RBP1.65□□□□□ -2.15
CD44-233ENST00000531141 CCDC172P0C7W6 258 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 PRKACAP17612 351 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 PMCHP20382 165 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 NUP62P37198 522 aaPredicted RBP1.65□□□□□ -2.15
CD44-233ENST00000531141 PSMB2P49721 201 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 HADHBP55084 474 aaKnown RBP1.65□□□□□ -2.15
CD44-233ENST00000531141 CARD18P57730 90 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 LAMTOR4Q0VGL1 99 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 MLIPQ5VWP3 458 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 AMMECR1LQ6DCA0 310 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 THOC7Q6I9Y2 204 aaKnown RBP1.65□□□□□ -2.15
CD44-233ENST00000531141 SMARCD3Q6STE5 483 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 SPATA24Q86W54 205 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 ZNF321PQ8N8H1 164 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 ZFP62Q8NB50 900 aaPredicted RBP1.65□□□□□ -2.15
CD44-233ENST00000531141 ING5Q8WYH8 240 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 CIDECQ96AQ7 238 aaPredicted RBP1.65□□□□□ -2.15
CD44-233ENST00000531141 ISG20Q96AZ6 181 aaKnown RBP1.65□□□□□ -2.15
CD44-233ENST00000531141 OR2V2Q96R30 315 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 PEBP4Q96S96 227 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 HAUS4Q9H6D7 363 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 LZTFL1Q9NQ48 299 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 PRSS16Q9NQE7 514 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 STK38LQ9Y2H1 464 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 KLF12Q9Y4X4 402 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 TSC2P49815 1807 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 PATJQ8NI35 1801 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 MED13Q9UHV7 2174 aa1.65□□□□□ -2.15
CD44-233ENST00000531141 APCP25054 2843 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 MYH7BA7E2Y1 1941 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 LOXHD1Q8IVV2 1947 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 DOCK2Q92608 1830 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 ATAD5Q96QE3 1844 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 SPEF2Q9C093 1822 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 ATG2BQ96BY7 2078 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 HIVEP3Q5T1R4 2406 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 A0A0J9YYE9 177 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 VPS37CA5D8V6 355 aaPredicted RBP1.64□□□□□ -2.15
CD44-233ENST00000531141 ZNF99A8MXY4 864 aaPredicted RBP1.64□□□□□ -2.15
CD44-233ENST00000531141 ZNF878C9JN71 531 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 ZNF701M0R085 212 aaPredicted RBP1.64□□□□□ -2.15
CD44-233ENST00000531141 CETN3O15182 167 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 YKT6O15498 198 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 TRBC1P01850 177 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 IGHG2P01859 326 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 IGKV5-2P06315 115 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 OR4Q2P0C623 313 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 MSR1P21757 451 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 CPN2P22792 545 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 HOXA6P31267 233 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 CLDN8P56748 225 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 MTPNP58546 118 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 PAFAH1B2P68402 229 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 TSC22D1Q15714 1073 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 LINC00303Q3SY05 128 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 CCDC122Q5T0U0 273 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 ZNF660Q6AZW8 331 aaPredicted RBP1.64□□□□□ -2.15
CD44-233ENST00000531141 ZNF470Q6ECI4 717 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 CLEC18BQ6UXF7 455 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 ZCCHC24Q8N2G6 241 aaKnown RBP1.64□□□□□ -2.15
CD44-233ENST00000531141 CYB561A3Q8NBI2 242 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 CMTM2Q8TAZ6 248 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 ORAOV1Q8WV07 137 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 PIH1D2Q8WWB5 315 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 CERS2Q96G23 380 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 ATP6V1G3Q96LB4 118 aa1.64□□□□□ -2.15
CD44-233ENST00000531141 SIKE1Q9BRV8 207 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms