RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 SNRNP70P08621 437 aaKnown RBP8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 CELP19835 753 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 CEACAM3P40198 252 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 VHLP40337 213 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 WNT4P56705 351 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 LOXL3P58215 753 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 MED21Q13503 144 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 MPV17LQ2QL34 196 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 ATAD3CQ5T2N8 411 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 KPRPQ5T749 579 aaPredicted RBP8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 ZNF497Q6ZNH5 498 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 C5orf24Q7Z6I8 188 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 NDUFA11Q86Y39 141 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 THNSL2Q86YJ6 484 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 STX19Q8N4C7 294 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 DRAM1Q8N682 238 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 TMEM104Q8NE00 496 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 OR10A7Q8NGE5 316 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 CAPSLQ8WWF8 208 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 NRG4Q8WWG1 115 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 TOMM40LQ969M1 308 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 RPEQ96AT9 228 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 CREB3L1Q96BA8 519 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 RBMXL1Q96E39 390 aaKnown RBP8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 BANF2Q9H503 90 aa8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 RCC2Q9P258 522 aaKnown RBP8.3□□□□□ -1.08
PRPF40B-204ENST00000527253 IGHV3-43A0A0B4J1X8 118 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 ZNF780AO75290 641 aaPredicted RBP8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 PEX14O75381 377 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 PRB2P02812 416 aaPredicted RBP8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 IGHV3-43DP0DP04 118 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 GTF2F2P13984 249 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 GZMHP20718 246 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 MNDAP41218 407 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 TAS2R43P59537 309 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 EMX1Q04741 257 aaPredicted RBP8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 HNF4GQ14541 408 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 ARSJQ5FYB0 599 aaPredicted RBP8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 FAM27D1Q5T7N8 215 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 SIGIRRQ6IA17 410 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 CCDC144NLQ6NUI1 221 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 UNQ9370/PRO34162Q6UXP9 181 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 SLC16A12Q6ZSM3 486 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 LINC00596Q86U02 117 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 JAGN1Q8N5M9 183 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 OR56B4Q8NH76 319 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 ARL11Q969Q4 196 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 R3HDM4Q96D70 268 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 S100A13Q99584 98 aa8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 PAK1IP1Q9NWT1 392 aaPredicted RBP8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 LSM2Q9Y333 95 aaKnown RBP8.29□□□□□ -1.08
PRPF40B-204ENST00000527253 A0A1W2PRX2 142 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 C12orf77C9JDV5 145 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 H3BUI4 141 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 MYL12BO14950 172 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 SLC31A2O15432 143 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 ORC5O43913 435 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 CDK1P06493 297 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 FAM106CPP0CH98 169 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 REG1BP48304 166 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 ARHGDIBP52566 201 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 ZNF134P52741 427 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 MADCAM1Q13477 382 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 IRF3Q14653 427 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 OXLD1Q5BKU9 147 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 C6orf141Q5SZD1 244 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 RNLSQ5VYX0 342 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 RAB12Q6IQ22 244 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 CENPVQ7Z7K6 275 aaPredicted RBP8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 LRRTM1Q86UE6 522 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 CDH26Q8IXH8 852 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 GAPTQ8N292 157 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 OR4K15Q8NH41 348 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 OR1L1Q8NH94 360 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 MYDGFQ969H8 173 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 AKR1E2Q96JD6 320 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 SELENOIQ9C0D9 397 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 GFOD1Q9NXC2 390 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 CKLFQ9UBR5 152 aa8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 AMMECR1Q9Y4X0 333 aaPredicted RBP8.28□□□□□ -1.08
PRPF40B-204ENST00000527253 IGHV3-72A0A0B4J1Y9 119 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 IGHV1-3A0A0C4DH29 117 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 TCRBV4S1A1TA0A5B7 111 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 LINC01548A6NM66 108 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 PTGES3LE9PB15 166 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 AIPO00170 330 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 SDCBPO00560 298 aaPredicted RBP8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 HSD17B6O14756 317 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 IGKV1D-33P01593 117 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 IGKV1-33P01594 117 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 MGMTP16455 207 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 RCC1P18754 421 aaPredicted RBP8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 RAB7AP51149 207 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 AQP4P55087 323 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 ZNF816Q0VGE8 651 aaPredicted RBP8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 EBI3Q14213 229 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 GPR176Q14439 515 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 ACSM3Q53FZ2 586 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 CT45A1Q5HYN5 189 aa8.27□□□□□ -1.09
PRPF40B-204ENST00000527253 C9orf152Q5JTZ5 239 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms