RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 UBE2E1P51965 193 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 C17orf58Q2M2W7 97 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 TUSC1Q2TAM9 212 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 TMEM30BQ3MIR4 351 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 UBE2NLQ5JXB2 153 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 OR52W1Q6IF63 320 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 MOB1BQ7L9L4 216 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 MRPL30Q8TCC3 161 aaKnown RBP16.98■□□□□ 0.31
CD44-222ENST00000526025 DYRK2Q92630 601 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 CALYQ9NYX4 217 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 CCDC59Q9P031 241 aaKnown RBP16.98■□□□□ 0.31
CD44-222ENST00000526025 IGHV1-69DA0A0B4J2H0 117 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 SMIM31A0A1B0GVY4 71 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 RNASEK-C17orf49H0YIS7 233 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 IGHV1-69P01742 117 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 EPHA1P21709 976 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 SOX6P35712 828 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 ZNF880Q6PDB4 577 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 MRGPRDQ8TDS7 321 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 LHX4Q969G2 390 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 C12orf4Q9NQ89 552 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 NDUFA13Q9P0J0 144 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 AK3Q9UIJ7 227 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 TRAPPC2LQ9UL33 140 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 MGAT4AQ9UM21 535 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 KCNK7Q9Y2U2 307 aa16.97■□□□□ 0.31
CD44-222ENST00000526025 A0A087X0M5 115 aa16.96■□□□□ 0.31
CD44-222ENST00000526025 A0A1B0GX30 115 aa16.96■□□□□ 0.31
CD44-222ENST00000526025 GSTP1P09211 210 aaKnown RBP16.96■□□□□ 0.31
CD44-222ENST00000526025 CDK2P24941 298 aa16.96■□□□□ 0.31
CD44-222ENST00000526025 CD34P28906 385 aa16.96■□□□□ 0.31
CD44-222ENST00000526025 HCP5Q6MZN7 132 aa16.96■□□□□ 0.31
CD44-222ENST00000526025 MZT2AQ6P582 158 aa16.96■□□□□ 0.31
CD44-222ENST00000526025 OR13D1Q8NGV5 346 aa16.96■□□□□ 0.31
CD44-222ENST00000526025 DYNC2LI1Q8TCX1 351 aa16.96■□□□□ 0.31
CD44-222ENST00000526025 PHF21AQ96BD5 680 aa16.96■□□□□ 0.31
CD44-222ENST00000526025 ZFHX3Q15911 3703 aa16.95■□□□□ 0.3
CD44-222ENST00000526025 MEX3AA1L020 520 aaKnown RBP16.95■□□□□ 0.3
CD44-222ENST00000526025 C15orf65H3BRN8 121 aa16.95■□□□□ 0.3
CD44-222ENST00000526025 FPR2P25090 351 aa16.95■□□□□ 0.3
CD44-222ENST00000526025 RTN4RL2Q86UN3 420 aa16.95■□□□□ 0.3
CD44-222ENST00000526025 SAMD12Q8N8I0 201 aa16.95■□□□□ 0.3
CD44-222ENST00000526025 OR11H6Q8NGC7 330 aa16.95■□□□□ 0.3
CD44-222ENST00000526025 OR52M1Q8NGK5 317 aa16.95■□□□□ 0.3
CD44-222ENST00000526025 TMEM133Q9H2Q1 129 aa16.95■□□□□ 0.3
CD44-222ENST00000526025 DIABLOQ9NR28 239 aa16.95■□□□□ 0.3
CD44-222ENST00000526025 RSL24D1Q9UHA3 163 aaKnown RBP16.95■□□□□ 0.3
CD44-222ENST00000526025 F2RL2O00254 374 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 APOA1P02647 267 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 SSTR5P35346 364 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 PNLIPRP3Q17RR3 467 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 MIDNQ504T8 468 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 PRAMEF5Q5TYX0 476 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 ZNF782Q6ZMW2 699 aaPredicted RBP16.94■□□□□ 0.3
CD44-222ENST00000526025 OR4K15Q8NH41 348 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 CCDC107Q8WV48 283 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 S100A16Q96FQ6 103 aaKnown RBP16.94■□□□□ 0.3
CD44-222ENST00000526025 KIRREL1Q96J84 757 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 CYYR1Q96J86 154 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 CMSS1Q9BQ75 279 aaKnown RBP16.94■□□□□ 0.3
CD44-222ENST00000526025 MS4A7Q9GZW8 240 aaPredicted RBP16.94■□□□□ 0.3
CD44-222ENST00000526025 IDI2-AS1Q9NZ38 188 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 KCNIP1Q9NZI2 227 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 ZNF69Q9UC07 566 aa16.94■□□□□ 0.3
CD44-222ENST00000526025 NF1P21359 2839 aa16.93■□□□□ 0.3
CD44-222ENST00000526025 C12orf77C9JDV5 145 aa16.93■□□□□ 0.3
CD44-222ENST00000526025 SPINT2O43291 252 aa16.93■□□□□ 0.3
CD44-222ENST00000526025 CD3GP09693 182 aa16.93■□□□□ 0.3
CD44-222ENST00000526025 GNB3P16520 340 aa16.93■□□□□ 0.3
CD44-222ENST00000526025 RCC1P18754 421 aaPredicted RBP16.93■□□□□ 0.3
CD44-222ENST00000526025 MRPS15P82914 257 aaKnown RBP16.93■□□□□ 0.3
CD44-222ENST00000526025 PITPNAQ00169 270 aa16.93■□□□□ 0.3
CD44-222ENST00000526025 KLRD1Q13241 179 aa16.93■□□□□ 0.3
CD44-222ENST00000526025 ZNF260Q3ZCT1 412 aa16.93■□□□□ 0.3
CD44-222ENST00000526025 ARL11Q969Q4 196 aa16.93■□□□□ 0.3
CD44-222ENST00000526025 CLEC7AQ9BXN2 247 aa16.93■□□□□ 0.3
CD44-222ENST00000526025 CHMP1AQ9HD42 196 aaPredicted RBP16.93■□□□□ 0.3
CD44-222ENST00000526025 TRAV39A0A0B4J263 110 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 CCDC160A6NGH7 325 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 ODF3BA8MYP8 253 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 NPFFO15130 113 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 XRCC3O43542 346 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 MMP23AO75900 390 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 DLX1P56177 255 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 HMGN3Q15651 99 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 SRSF7Q16629 238 aaKnown RBP eCLIP16.92■□□□□ 0.3
CD44-222ENST00000526025 Q3ZCU0 254 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 CDNFQ49AH0 187 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 HACD4Q5VWC8 232 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 OLFML2AQ68BL7 652 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 ZNF626Q68DY1 528 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 PRDM13Q9H4Q3 707 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 COMMD3Q9UBI1 195 aa16.92■□□□□ 0.3
CD44-222ENST00000526025 JMJD1CQ15652 2540 aa16.91■□□□□ 0.3
CD44-222ENST00000526025 C2CD3Q4AC94 2353 aa16.91■□□□□ 0.3
CD44-222ENST00000526025 IGHV3OR16-10A0A075B7F0 116 aa16.91■□□□□ 0.3
CD44-222ENST00000526025 IGHV2-26A0A0B4J1V2 119 aa16.91■□□□□ 0.3
CD44-222ENST00000526025 MELTFP08582 738 aa16.91■□□□□ 0.3
CD44-222ENST00000526025 OMGP23515 440 aa16.91■□□□□ 0.3
CD44-222ENST00000526025 DTYMKP23919 212 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms