RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 GLYATQ6IB77 296 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 C3orf33Q6P1S2 294 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 GUSBP11Q6P575 273 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 SHISA6Q6ZSJ9 500 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 FAM19A3Q7Z5A8 133 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 VN1R4Q7Z5H5 301 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 PDPNQ86YL7 162 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 DOLPP1Q86YN1 238 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 ZIC4Q8N9L1 334 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 DCAF4L2Q8NA75 395 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 OR1L1Q8NH94 360 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 ZNRF2Q8NHG8 242 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 MCFD2Q8NI22 146 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 COQ8AQ8NI60 647 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 JOSD2Q8TAC2 188 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 KCTD4Q8WVF5 259 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 ZHX1-C8orf76Q96EF9 292 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 SLC35G5Q96KT7 338 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 C1orf147Q96MC9 270 aaPredicted RBP3.89□□□□□ -1.79
USP47-204ENST00000525078 OLFM3Q96PB7 478 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 CDX2Q99626 313 aaPredicted RBP3.89□□□□□ -1.79
USP47-204ENST00000525078 CHAC1Q9BUX1 264 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 ZNF717Q9BY31 904 aaPredicted RBP3.89□□□□□ -1.79
USP47-204ENST00000525078 GNB1LQ9BYB4 327 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 EIF5A2Q9GZV4 153 aaKnown RBP3.89□□□□□ -1.79
USP47-204ENST00000525078 FGF23Q9GZV9 251 aaPredicted RBP3.89□□□□□ -1.79
USP47-204ENST00000525078 HES4Q9HCC6 221 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 ZNF225Q9UK10 706 aa3.89□□□□□ -1.79
USP47-204ENST00000525078 CEP162Q5TB80 1403 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 BAZ1BQ9UIG0 1483 aaKnown RBP3.88□□□□□ -1.79
USP47-204ENST00000525078 IGHV3-66A0A0C4DH42 116 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 KLF18A0A0U1RQI7 1052 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 WI2-2373I1.2A0A1W2PRP0 233 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 OR5H1A6NKK0 313 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 KLLNB2CW77 178 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 EEF1E1-BLOC1S5C9J1V9 151 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 EEF1E1O43324 174 aaKnown RBP3.88□□□□□ -1.79
USP47-204ENST00000525078 TCF21O43680 179 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 SS18L1O75177 396 aaPredicted RBP3.88□□□□□ -1.79
USP47-204ENST00000525078 OR7C1O76099 320 aaPredicted RBP3.88□□□□□ -1.79
USP47-204ENST00000525078 IGLV2-8P01709 118 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 OR5G3P0C626 314 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 MARCKSL1P49006 195 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 HIST1H3AP68431 136 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 HLA-DRB3P79483 266 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 H3F3AP84243 136 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 PSG4Q00888 419 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 JOSD1Q15040 202 aaPredicted RBP3.88□□□□□ -1.79
USP47-204ENST00000525078 ELOCQ15369 112 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 MPPED2Q15777 294 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 ZNF239Q16600 458 aaKnown RBP3.88□□□□□ -1.79
USP47-204ENST00000525078 PYCR3Q53H96 274 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 FAM78BQ5VT40 261 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 ZNF774Q6NX45 483 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 TMEM205Q6UW68 189 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 FA2HQ7L5A8 372 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 GLT6D1Q7Z4J2 308 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 ATP5L2Q7Z4Y8 100 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 TMEM144Q7Z5S9 345 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 ZNF440Q8IYI8 595 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 TMEM158Q8WZ71 300 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 ACY3Q96HD9 319 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 BMFQ96LC9 184 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 OR2V2Q96R30 315 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 OR52E6Q96RD3 313 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 OR52D1Q9H346 318 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 MMP26Q9NRE1 261 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 TAS2R7Q9NYW3 318 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 NYAP2Q9P242 653 aa3.88□□□□□ -1.79
USP47-204ENST00000525078 DNMT1P26358 1616 aaKnown RBP3.88□□□□□ -1.79
USP47-204ENST00000525078 NCOA1Q15788 1441 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 DYSFO75923 2080 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 IGLV11-55A0A075B6I3 123 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 IGLV1-50A0A075B6I6 118 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 IGHV1OR15-9A0A0B4J2B8 117 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 TMEM72A0PK05 275 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 PQLC2LA1A4F0 135 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 C9JQL5 133 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 RGS5O15539 181 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 GCM2O75603 506 aaPredicted RBP3.87□□□□□ -1.79
USP47-204ENST00000525078 IFNA1P01562 189 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 IGHV4-34P06331 123 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 GIG44P09565 113 aaPredicted RBP3.87□□□□□ -1.79
USP47-204ENST00000525078 FAM228BP0C875 321 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 OR12D1P0DN82 309 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 ALDH3A1P30838 453 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 MAP2K4P45985 399 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 TFAMQ00059 246 aaKnown RBP3.87□□□□□ -1.79
USP47-204ENST00000525078 PMAIP1Q13794 54 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 IHHQ14623 411 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 ABCA11PQ4W5N1 156 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 LCN8Q6JVE9 175 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 C18orf65Q6ZTR6 163 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 ZBTB8OSQ8IWT0 167 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 SLC35F6Q8N357 371 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 UBL4BQ8N7F7 174 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 ZNF676Q8N7Q3 588 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 OR9I1Q8NGQ6 314 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 TYMSOSQ8TAI1 123 aa3.87□□□□□ -1.79
USP47-204ENST00000525078 C15orf40Q8WUR7 153 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms