RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 DEFB108BQ8NET1 73 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 OR13F1Q8NGS4 319 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 OR13D1Q8NGV5 346 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 LRRC29Q8WV35 223 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 GHSRQ92847 366 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 YPEL2Q96QA6 119 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 MGLLQ99685 303 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 SRSF8Q9BRL6 282 aaKnown RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 BPESC1Q9GZL8 116 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 MS4A7Q9GZW8 240 aaPredicted RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 STEAP1Q9UHE8 339 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 JPT1Q9UK76 154 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 CACNG2Q9Y698 323 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 SVEP1Q4LDE5 3571 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 COL7A1Q02388 2944 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 IGKV1D-17A0A075B6S4 117 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 OR2AT4A6NND4 320 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 J3QLW9 94 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 GABARAPO95166 117 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 SPDEFO95238 335 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 LY86O95711 162 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 NAPSAO96009 420 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 GYPBP06028 91 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 PATE4P0C8F1 98 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 RRASP10301 218 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 GTF2F2P13984 249 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ZNF19P17023 458 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 FUT3P21217 361 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 CA6P23280 308 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 GLRA1P23415 457 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 TGFBR2P37173 567 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 PRKXP51817 358 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ARPC4P59998 168 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ERVS71-1P61550 626 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 DBPQ10586 325 aaPredicted RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 FHL3Q13643 280 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 KIR3DS1Q14943 382 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 TP53I3Q53FA7 332 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 HSD17B12Q53GQ0 312 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ACTBL2Q562R1 376 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 C9orf152Q5JTZ5 239 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ZNF626Q68DY1 528 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 XAF1Q6GPH4 301 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 DGAT2L7PQ6IED9 249 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 CCDC144NLQ6NUI1 221 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 C11orf87Q6NUJ2 197 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 PET117Q6UWS5 81 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 Q6YL49 198 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ZNF497Q6ZNH5 498 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 OSR2Q8N2R0 312 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ASCC1Q8N9N2 400 aaKnown RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 OR56B1Q8NGI3 324 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ADAT3Q96EY9 351 aaPredicted RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 V9GY05 133 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 TMEM30CPA0ZSE6 113 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 SMIM30A4D0T7 59 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 F5H5P2 479 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 SLC33A1O00400 549 aaPredicted RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 DEGS1O15121 323 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 FGF16O43320 207 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 PPIHO43447 177 aaKnown RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 SPRY3O43610 288 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 SSX4O60224 188 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 PDCD6O75340 191 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 HAND1O96004 215 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 MYL9P24844 172 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 IL3RAP26951 378 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ZNF93P35789 620 aaPredicted RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 CEACAM3P40198 252 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ETV6P41212 452 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 FAM3BP58499 235 aaPredicted RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 GNB2P62879 340 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 EMX1Q04741 257 aaPredicted RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 HLXQ14774 488 aaPredicted RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 CDK10Q15131 360 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ALKBH6Q3KRA9 238 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ACSM3Q53FZ2 586 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 SPATA46Q5T0L3 261 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 RSBN1Q5VWQ0 802 aaPredicted RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 TMEM91Q6ZNR0 172 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 RBPMS2Q6ZRY4 209 aaKnown RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 ZNF525Q8N782 197 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 CNIH3Q8TBE1 160 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 ZNF418Q8TF45 676 aaPredicted RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 PIGCQ92535 297 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 AP3S1Q92572 193 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 MSI2Q96DH6 328 aaKnown RBP2.32□□□□□ -2.04
MCF2-208ENST00000519895 FOXN4Q96NZ1 517 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 OR14A2Q96R54 314 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 GAL3ST1Q99999 423 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 CCDC90BQ9GZT6 254 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 DPAGT1Q9H3H5 408 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 MMP26Q9NRE1 261 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 MTCH1Q9NZJ7 389 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 CLN8Q9UBY8 286 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 DUSP13Q9UII6 198 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 SSR3Q9UNL2 185 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 KCNK7Q9Y2U2 307 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 AUP1Q9Y679 476 aa2.32□□□□□ -2.04
MCF2-208ENST00000519895 IGKV1-27A0A075B6S5 117 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms