RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 BSXQ3C1V8 233 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 TPRX1Q8N7U7 411 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 ZNF519Q8TB69 540 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 WDR54Q9H977 334 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 ZNF236Q9UL36 1845 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 OR5H1A6NKK0 313 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 MDH2P40926 338 aaKnown RBP11.04□□□□□ -0.64
USP53-209ENST00000514665 GFRALQ6UXV0 394 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 NUFIP2Q7Z417 695 aaKnown RBP11.04□□□□□ -0.64
USP53-209ENST00000514665 OR10C1Q96KK4 312 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 CDX2Q99626 313 aaPredicted RBP11.04□□□□□ -0.64
USP53-209ENST00000514665 ATP5SQ99766 215 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 OR2J1Q9GZK6 312 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 IL36GQ9NZH8 169 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 DOK5Q9P104 306 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 OR1A1Q9P1Q5 309 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 OR2W1Q9Y3N9 320 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 A0A0U1RQV5 110 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 IGKV3-11P04433 115 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 PSG2P11465 335 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 BPIFB3P59826 476 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 DCAF10Q5QP82 559 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 ZNF880Q6PDB4 577 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 SLC36A1Q7Z2H8 476 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 OR5A2Q8NGI9 324 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 TMEM147Q9BVK8 224 aa11.04□□□□□ -0.64
USP53-209ENST00000514665 AURKAIP1Q9NWT8 199 aaPredicted RBP11.04□□□□□ -0.64
USP53-209ENST00000514665 AP4M1O00189 453 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 PMCHP20382 165 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 RBM11P57052 281 aaKnown RBP11.03□□□□□ -0.64
USP53-209ENST00000514665 ZNF273Q14593 569 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 TRIP6Q15654 476 aaKnown RBP11.03□□□□□ -0.64
USP53-209ENST00000514665 SLC25A47Q6Q0C1 308 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 CRIPAKQ8N1N5 446 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 OR2M7Q8NG81 312 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 SLC25A40Q8TBP6 338 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 SSMEM1Q8WWF3 244 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 NDUFB3O43676 98 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 TIAF1O95411 115 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 ISG15P05161 165 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 SEC11BP0C7V7 166 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 TMEM50BP56557 158 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 ANKRD55Q3KP44 614 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 NEIL1Q96FI4 390 aaPredicted RBP11.03□□□□□ -0.64
USP53-209ENST00000514665 FAM206AQ9NX38 181 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 KIAA1456Q9P272 454 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 HS3ST3B1Q9Y662 390 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 A0A087WV48 116 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 HAND1O96004 215 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 HLA-GP17693 338 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 RAB5AP20339 215 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 CSN1S1P47710 185 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 CNN1P51911 297 aaKnown RBP11.03□□□□□ -0.64
USP53-209ENST00000514665 KLF3P57682 345 aaPredicted RBP11.03□□□□□ -0.64
USP53-209ENST00000514665 TNFAIP6P98066 277 aaPredicted RBP11.03□□□□□ -0.64
USP53-209ENST00000514665 FOXO1Q12778 655 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 FAM78BQ5VT40 261 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 DTD1Q8TEA8 209 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 G6PC2Q9NQR9 355 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 NAT8BQ9UHF3 227 aa11.03□□□□□ -0.64
USP53-209ENST00000514665 NYNRINQ9P2P1 1898 aaKnown RBP11.03□□□□□ -0.64
USP53-209ENST00000514665 LOC101059948A0A1B0GTJ6 334 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 XKRY2A2RUG3 117 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 H3BQ15 152 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 DNPH1O43598 174 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 RAMP1O60894 148 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 OPRK1P41145 380 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 HIST1H3AP68431 136 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 DLK1P80370 383 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 IGFBP7Q16270 282 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 TOMM20LQ6UXN7 152 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 TMEM230Q96A57 120 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 SNX22Q96L94 193 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 TLNRD1Q9H1K6 362 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 PARP11Q9NR21 331 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 LTBP1Q14766 1721 aa11.02□□□□□ -0.64
USP53-209ENST00000514665 A0A1W2PQM1 296 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 NPIPB9F8W1W9 429 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 RPL36A-HNRNPH2H7BZ11 118 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 MFNGO00587 321 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 SCTP09683 121 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 AESQ08117 197 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 SNAI3Q3KNW1 292 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 R3HDM4Q96D70 268 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 DIDO1Q9BTC0 2240 aaKnown RBP11.02□□□□□ -0.65
USP53-209ENST00000514665 SCN4AP35499 1836 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 ANKRD36A6QL64 1941 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 SERTM2A0A1B0GWG4 89 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 S100A7P31151 101 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 G6PCP35575 357 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 ZP1P60852 638 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 IGLV3-21P80748 117 aaPredicted RBP11.02□□□□□ -0.65
USP53-209ENST00000514665 MDP1Q86V88 176 aa11.02□□□□□ -0.65
USP53-209ENST00000514665 DBX1A6NMT0 343 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 CYC1P08574 325 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 MDKP21741 143 aaPredicted RBP11.01□□□□□ -0.65
USP53-209ENST00000514665 MRPS11P82912 194 aaKnown RBP11.01□□□□□ -0.65
USP53-209ENST00000514665 NAAAQ02083 359 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 UBE2V2Q15819 145 aa11.01□□□□□ -0.65
USP53-209ENST00000514665 CXorf66Q5JRM2 361 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms