RNA–Protein interactions for RNA: ENST00000512107.5

MATR3-238, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-238	ENST00000512107	SOX6	P35712	828 aa		11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	KCNJ3	P48549	501 aa		11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	LDLRAD2	Q5SZI1	272 aa		11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	CNIH2	Q6PI25	160 aa		11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	ZNF782	Q6ZMW2	699 aa	Predicted RBP	11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	LEAP2	Q969E1	77 aa		11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	SOST	Q9BQB4	213 aa		11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	PCGF1	Q9BSM1	259 aa		11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	C6orf62	Q9GZU0	229 aa	Predicted RBP	11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	NCOR1P1	Q9H4R4	102 aa		11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	MBNL3	Q9NUK0	354 aa	Known RBP	11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	CALY	Q9NYX4	217 aa		11.9	□□□□□ -0.5
MATR3-238	ENST00000512107	TRBV6-6	A0A0A6YYG2	114 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	IGKV1-6	A0A0C4DH72	117 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107		A0A0G2JMP0	313 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107		A0A0X1KG70	313 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107		A0A1W2PRD5	423 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107		A0A1W2PRF3	423 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107		A0A1W2PRM7	423 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	hADV38S2	A0JD32	116 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	MEIS3P1	A6NDR6	274 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107		A8MV72	311 aa	Predicted RBP	11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	FAM25A	B3EWG3	89 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	FAM25C	B3EWG5	89 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	FAM25G	B3EWG6	89 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	INAFM1	C9JVW0	142 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	NPIPB11	E5RHQ5	1161 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	RNASEK-C17orf49	H0YIS7	233 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	IGHV3-7	P01780	117 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	MELTF	P08582	738 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	FCGR3A	P08637	254 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	TNFSF8	P32971	234 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	RBM39	Q14498	530 aa	Known RBP	11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	LTC4S	Q16873	150 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	C11orf91	Q3C1V1	193 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	FAM120AOS	Q5T036	256 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	HACD4	Q5VWC8	232 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	RUSC1-AS1	Q66K80	236 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	MZT2A	Q6P582	158 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	TRAPPC6B	Q86SZ2	158 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	KIR3DL3	Q8N743	410 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	GVQW1	Q8N7I0	195 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	OR4M2	Q8NGB6	313 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	AP3S1	Q92572	193 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	CMTM3	Q96MX0	182 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	ZNF714	Q96N38	554 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	ABHD1	Q96SE0	405 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	CMSS1	Q9BQ75	279 aa	Known RBP	11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	LINC00574	Q9H8X3	128 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107		Q9N2K0	584 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	EXTL2	Q9UBQ6	330 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	KCNS2	Q9ULS6	477 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	UBE2J1	Q9Y385	318 aa	Predicted RBP	11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	AUP1	Q9Y679	476 aa		11.89	□□□□□ -0.51
MATR3-238	ENST00000512107	FN1	P02751	2386 aa	Known RBP	11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	IGHV3-43	A0A0B4J1X8	118 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107		M0R1W7	72 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	TOX4	O94842	621 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	SCT	P09683	121 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	CD3G	P09693	182 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	IGHV1-8	P0DP01	117 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	IGHV3-43D	P0DP04	118 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	GNMT	Q14749	295 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	HERPUD1	Q15011	391 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	HMGN3	Q15651	99 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	BTNL3	Q6UXE8	466 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	BCL6B	Q8N143	479 aa	Predicted RBP	11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	OR6Q1	Q8NGQ2	317 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	SETD6	Q8TBK2	473 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	C17orf50	Q8WW18	174 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	LHX4	Q969G2	390 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	UPRT	Q96BW1	309 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	S100A16	Q96FQ6	103 aa	Known RBP	11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	AJUBA	Q96IF1	538 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	PARP12	Q9H0J9	701 aa	Known RBP	11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	TRAPPC2L	Q9UL33	140 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	KPTN	Q9Y664	436 aa		11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	SON	P18583	2426 aa	Known RBP	11.88	□□□□□ -0.51
MATR3-238	ENST00000512107	TRGV10	A0A0A0MS01	117 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	CENPVL3	A0A0U1RRI6	287 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	KBTBD11-OT1	A0A1B0GTJ5	212 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	ZNF729	A6NN14	1252 aa	Predicted RBP	11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	RGS5	O15539	181 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	HBZ	P02008	142 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	GSTP1	P09211	210 aa	Known RBP	11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	PAX6	P26367	422 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	RANBP1	P43487	201 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	LOXL3	P58215	753 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	RNASE12	Q5GAN4	147 aa	Known RBP	11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	TMEM69	Q5SWH9	247 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	SNX29P2	Q8IUI4	249 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	OR52L2P	Q8NGH6	319 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	ARL11	Q969Q4	196 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	KIRREL1	Q96J84	757 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	SUCNR1	Q9BXA5	334 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	TAF9B	Q9HBM6	251 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	ZNF286A	Q9HBT8	521 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	CHMP1A	Q9HD42	196 aa	Predicted RBP	11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	DIABLO	Q9NR28	239 aa		11.87	□□□□□ -0.51
MATR3-238	ENST00000512107	TAS2R3	Q9NYW6	316 aa		11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms