RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TAX1BP3O14907 124 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 RBFOX2O43251 390 aaKnown RBP eCLIP10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 ZNF253O75346 499 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 ROM1Q03395 351 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 CLLU1OSQ5K130 101 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 CNKSR3Q6P9H4 555 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 CXCL17Q6UXB2 119 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 CENPVQ7Z7K6 275 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 OR2Y1Q8NGV0 311 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 OR4C3Q8NH37 302 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 GPHA2Q96T91 129 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 GTSF1LQ9H1H1 148 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 HS3ST2Q9Y278 367 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 IGHV2-26A0A0B4J1V2 119 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 A0A1B0GV72 72 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 PGPEP1LA6NFU8 196 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 C1QTNF9BB2RNN3 333 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 SNRNP200O75643 2136 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 GPX1P07203 203 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 CD226Q15762 336 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 RAET1LQ5VY80 246 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 FAM58AQ8N1B3 248 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 OR4S2Q8NH73 311 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 ASB10Q8WXI3 467 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 MSI2Q96DH6 328 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 MRPL18Q9H0U6 180 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 MCTS1Q9ULC4 181 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 OR1A2Q9Y585 309 aa10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 ASCC3Q8N3C0 2202 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-213ENST00000511496 OR6C6A6NF89 314 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 NUDT3O95989 172 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 APBA3O96018 575 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 PSMB3P49720 205 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 ZNF83P51522 516 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 METAP1P53582 386 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 PSG9Q00887 426 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 UEVLDQ8IX04 471 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 FAM19A2Q8N3H0 131 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 RAB42Q8N4Z0 105 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 FER1L6-AS1Q8NA97 138 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 OR10W1Q8NGF6 305 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 OR51E1Q8TCB6 317 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 NUS1Q96E22 293 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 UHRF2Q96PU4 802 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 ERRFI1Q9UJM3 462 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 LSM7Q9UK45 103 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 POLR1DQ9Y2S0 133 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 BRCA2P51587 3418 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 VCANP13611 3396 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 LHX2P50458 406 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 SPIN3Q5JUX0 258 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 FAM71F1Q96KD3 344 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 PLEKHJ1Q9NW61 149 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 CDC42EP3Q9UKI2 254 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 HEBP2Q9Y5Z4 205 aa10.4□□□□□ -0.74
LIMCH1-213ENST00000511496 MT-CO2P00403 227 aa10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 C3orf79P0CE67 100 aa10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 EPHA8P29322 1005 aaPredicted RBP10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 LRRC10Q5BKY1 277 aa10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 PARS2Q7L3T8 475 aaKnown RBP10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 C1QL2Q7Z5L3 287 aa10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 ZNF695Q8IW36 515 aa10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 ARHGEF39Q8N4T4 335 aa10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 ELOVL5Q9NYP7 299 aa10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 UBE2J1Q9Y385 318 aaPredicted RBP10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 ATG2BQ96BY7 2078 aa10.4□□□□□ -0.75
LIMCH1-213ENST00000511496 FCN1O00602 326 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 ADAM20O43506 726 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 C1QTNF9P0C862 333 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 OTX2P32243 289 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 CEACAM3P40198 252 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 MDH2P40926 338 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 SRPXP78539 464 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 POU3F1Q03052 451 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 TCTN1Q2MV58 587 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 PLPPR5Q32ZL2 321 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 ODF3L1Q8IXM7 274 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 LIPHQ8WWY8 451 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 DNAH14Q0VDD8 3507 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 PCNX3Q9H6A9 2034 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 SERTM2A0A1B0GWG4 89 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 PRSS37A4D1T9 235 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 WNT2P09544 360 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 ECI1P42126 302 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 KIAA1644Q3SXP7 199 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 OR1B1Q8NGR6 318 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 PLSCR4Q9NRQ2 329 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 TRAV26-1A0A087WT03 109 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 ISG15P05161 165 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 HNRNPA2B1P22626 353 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 RPS20P60866 119 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 FHL5Q5TD97 284 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 C7orf61Q8IZ16 206 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 RLN3Q8WXF3 142 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 AGMATQ9BSE5 352 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 HDAC8Q9BY41 377 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 ABI3Q9P2A4 366 aa10.39□□□□□ -0.75
LIMCH1-213ENST00000511496 SPINK4O60575 86 aa10.38□□□□□ -0.75
LIMCH1-213ENST00000511496 ASAH2BP0C7U1 165 aa10.38□□□□□ -0.75
LIMCH1-213ENST00000511496 MC5RP33032 325 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms