RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PAX5Q02548 391 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 RIPPLY1Q0D2K3 151 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 IL24Q13007 206 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 ZNF829Q3KNS6 432 aaPredicted RBP3.05□□□□□ -1.92
USP54-217ENST00000498213 Q3ZCU0 254 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 GLYATL3Q5SZD4 288 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 PRAMEF6Q5VXH4 476 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 SLX4IPQ5VYV7 408 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 Q6ZSR3 168 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 DCXRQ7Z4W1 244 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.05□□□□□ -1.92
USP54-217ENST00000498213 TIGD4Q8IY51 512 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 OSR2Q8N2R0 312 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 C11orf42Q8N5U0 333 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 CHST4Q8NCG5 386 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 ADAD2Q8NCV1 583 aaKnown RBP3.05□□□□□ -1.92
USP54-217ENST00000498213 OR10A7Q8NGE5 316 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 OR8H1Q8NGG4 311 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 CHPT1Q8WUD6 406 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 SLC7A6Q92536 515 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 SGK3Q96BR1 496 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 LGALS12Q96DT0 336 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 SLAMF6Q96DU3 332 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 ASB9Q96DX5 294 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 REEP6Q96HR9 211 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 PYURFQ96I23 114 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 C7orf34Q96L11 122 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 GAFA1Q96PS6 74 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 OR5M11Q96RB7 305 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 NMNAT3Q96T66 252 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 KCTD14Q9BQ13 255 aaPredicted RBP3.05□□□□□ -1.92
USP54-217ENST00000498213 DGCR6LQ9BY27 220 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 MROQ9BYG7 248 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 OR51I2Q9H344 312 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 GAL3ST2Q9H3Q3 398 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 MAGIXQ9H6Y5 334 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 ZNF702PQ9H963 129 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 HES4Q9HCC6 221 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 S100A14Q9HCY8 104 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 RAB9BQ9NP90 201 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 RPRD1BQ9NQG5 326 aaKnown RBP3.05□□□□□ -1.92
USP54-217ENST00000498213 CMC2Q9NRP2 79 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 UFSP2Q9NUQ7 469 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 TAS2R3Q9NYW6 316 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 ZNF222Q9UK12 451 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 LINC00312Q9Y6C7 94 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 COMMD3-BMI1R4GMX3 469 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 FAT2Q9NYQ8 4349 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 DNAH2Q9P225 4427 aa3.05□□□□□ -1.92
USP54-217ENST00000498213 DHRS12A0PJE2 317 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 LEUTXA8MZ59 168 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 H7C1C5 153 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 J3QT63 122 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 DCTN6O00399 190 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 CCRL2O00421 344 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 ZNF593O00488 134 aaPredicted RBP3.04□□□□□ -1.92
USP54-217ENST00000498213 GATBO75879 557 aaKnown RBP3.04□□□□□ -1.92
USP54-217ENST00000498213 DHRS3O75911 302 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 SERPINA1P01009 418 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 FABP3P05413 133 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 CSN2P05814 226 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 LYNP07948 512 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 SPARCP09486 303 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 ZNF728P0DKX0 622 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 HTR1DP28221 377 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 CD34P28906 385 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 MAGEA2P43356 314 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 GPR4P46093 362 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 KCNJ3P48549 501 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 CX3CR1P49238 355 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 FXYD6P3P58550 94 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 LCN6P62502 163 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 ESRRGP62508 458 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 FLOT2Q14254 428 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 FCN2Q15485 313 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 DGUOKQ16854 277 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 PNLIPRP3Q17RR3 467 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 SNAI3Q3KNW1 292 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 CXorf66Q5JRM2 361 aaPredicted RBP3.04□□□□□ -1.92
USP54-217ENST00000498213 SPIN3Q5JUX0 258 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 FAM201AQ5SY85 155 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 LPCAT4Q643R3 524 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 TMEM42Q69YG0 159 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 HCP5Q6MZN7 132 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 ACP7Q6ZNF0 438 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 CENPVQ7Z7K6 275 aaPredicted RBP3.04□□□□□ -1.92
USP54-217ENST00000498213 SPATA24Q86W54 205 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 PDZD9Q8IXQ8 264 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 OR8H2Q8N162 312 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 FAM71E2Q8N5Q1 922 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 FAM216BQ8N7L0 139 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 OR5AU1Q8NGC0 362 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 OR5T2Q8NGG2 359 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 OR8U1Q8NH10 309 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 OR4K13Q8NH42 304 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 OTOSQ8NHW6 89 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 PIFOQ8TCI5 191 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 HAVCR2Q8TDQ0 301 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 AQP3Q92482 292 aa3.04□□□□□ -1.92
USP54-217ENST00000498213 H1FXQ92522 213 aaKnown RBP3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms