RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ZPBPQ9BS86 351 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 MGAQ8IWI9 3026 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 ZNF732B4DXR9 585 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 MT-CO3P00414 261 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 TBC1D26Q86UD7 250 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 CYB561D1Q8N8Q1 229 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 IL1F10Q8WWZ1 152 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 EXTL1Q92935 676 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 SLC35B3Q9H1N7 401 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 GLRX2Q9NS18 164 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 IGKV1D-13A0A0B4J2D9 117 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 HS3ST1O14792 307 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 CXCL1P09341 107 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 IGKV1-13P0DP09 117 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 FUT3P21217 361 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 SLC25A24Q6NUK1 477 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 ZNF100Q8IYN0 542 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 GAPTQ8N292 157 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 IL22RA1Q8N6P7 574 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 TMEM45BQ96B21 275 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 APH1AQ96BI3 265 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 PRDM14Q9GZV8 571 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 PLEKHA2Q9HB19 425 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 MTCH1Q9NZJ7 389 aa14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 MRPS18CQ9Y3D5 142 aaKnown RBP14.14□□□□□ -0.15
CCDC88B-210ENST00000494566 WRBO00258 174 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 TMEM50AO95807 157 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 ZNF16P17020 682 aaPredicted RBP14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 OR2C3Q8N628 320 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 RHOVQ96L33 236 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 REPIN1Q9BWE0 567 aaKnown RBP14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 IGKV3D-15A0A087WSY6 115 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 C3orf85A0A1B0GTC6 90 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 ZFP92A6NM28 416 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 M0R296 226 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 PPYP01298 95 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 AGAP20933 346 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 NKX2-1P43699 371 aaPredicted RBP14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 UBE2KP61086 200 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 RND3P61587 244 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 VAMP2P63027 116 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 HES3Q5TGS1 186 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 COLCA1Q6ZS62 124 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 LGI3Q8N145 548 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 SPSB4Q96A44 273 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 RAB39BQ96DA2 213 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 CCL28Q9NRJ3 127 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 DECR2Q9NUI1 292 aa14.13□□□□□ -0.15
CCDC88B-210ENST00000494566 H3BQ15 152 aa14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 GAPDHP04406 335 aaKnown RBP14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 PMP22Q01453 160 aa14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 SPNS3Q6ZMD2 512 aa14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 ZNF818PQ6ZRF7 136 aa14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 USF3Q68DE3 2245 aa14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 UBE2CO00762 179 aa14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 HOXA4Q00056 320 aaPredicted RBP14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 RNFT1Q5M7Z0 435 aa14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 LCN15Q6UWW0 184 aa14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 RNASE11Q8TAA1 199 aaKnown RBP14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 RDH5Q92781 318 aa14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 KMT2EQ8IZD2 1858 aa14.12□□□□□ -0.15
CCDC88B-210ENST00000494566 ARGFXA6NJG6 315 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 IAPPP10997 89 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 SRSF6Q13247 344 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 MCEMP1Q8IX19 187 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 BOD1Q96IK1 185 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 GNG13Q9P2W3 67 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 ZNF391Q9UJN7 358 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 WISP2O76076 250 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 MPV17LQ2QL34 196 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 ZDHHC23Q8IYP9 409 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 OR1K1Q8NGR3 316 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 C18orf12Q96KH6 178 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 ZNF251Q9BRH9 671 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 RNF122Q9H9V4 155 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 ABI3Q9P2A4 366 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 PROB1E7EW31 1015 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 MPPED1O15442 326 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 CYB5BO43169 146 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 CHST1O43916 411 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 ECI1P42126 302 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 GINS3Q9BRX5 216 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 RSG1Q9BU20 258 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 IL36GQ9NZH8 169 aa14.11□□□□□ -0.15
CCDC88B-210ENST00000494566 CEP250Q9BV73 2442 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 RBFOX3A6NFN3 312 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 CNOT4O95628 575 aaKnown RBP14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 SP1P08047 785 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 SEC11BP0C7V7 166 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 ZNF883P0CG24 379 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 WNT5AP41221 380 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 ERVFRD-1P60508 538 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 DLK1P80370 383 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 OR2T2Q6IF00 324 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 THNSL2Q86YJ6 484 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 OR1J1Q8NGS3 322 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 Q8WTZ3 238 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 MOB3AQ96BX8 217 aa14.1□□□□□ -0.15
CCDC88B-210ENST00000494566 AP4M1O00189 453 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms