RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ZP1P60852 638 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 ZNF816Q0VGE8 651 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-213ENST00000493475 ZSCAN26Q16670 478 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 Q3ZCU0 254 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 CCDC58Q4VC31 144 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 LPCAT4Q643R3 524 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 TMPRSS11AQ6ZMR5 421 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 C8orf86Q6ZUL3 223 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 LHFPL3Q86UP9 236 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 STPG2Q8N412 459 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 OR52M1Q8NGK5 317 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 OR13A1Q8NGR1 328 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 OR10AC1Q8NH08 325 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 LGALS12Q96DT0 336 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 DPCDQ9BVM2 203 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-213ENST00000493475 TMEM138Q9NPI0 162 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 ST3GAL6Q9Y274 331 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 DSCAML1Q8TD84 2053 aa9.17□□□□□ -0.94
COL6A3-213ENST00000493475 NBEAL2Q6ZNJ1 2754 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 TRAV24A0A0B4J272 114 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 A0A1W2PPI3 338 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 WI2-2373I1.2A0A1W2PRP0 233 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 SPINT2O43291 252 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 GTF2F2P13984 249 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 MPV17LQ2QL34 196 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 ZIK1Q3SY52 487 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-213ENST00000493475 C4orf48Q5BLP8 95 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 C9orf66Q5T8R8 295 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 RSBN1Q5VWQ0 802 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-213ENST00000493475 TRAT1Q6PIZ9 186 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 RNF144BQ7Z419 303 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 IZUMO1Q8IYV9 350 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 LINC00528Q8N1L1 170 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 C8orf31Q8N9H6 132 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 OR51A2Q8NGJ7 313 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 RFESDQ8TAC1 157 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 C9orf16Q9BUW7 83 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 IFT22Q9H7X7 185 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 ERVK13-1Q9NX77 482 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 ING4Q9UNL4 249 aa9.16□□□□□ -0.94
COL6A3-213ENST00000493475 IGHV1-3A0A0C4DH29 117 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 CCL24O00175 119 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 GABRPO00591 440 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 ORC5O43913 435 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 MOSP00540 346 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 IGHV3-7P01780 117 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 ELANEP08246 267 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 CGB3P0DN86 165 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 CGB7P0DN87 165 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 MYL12AP19105 171 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 CD1BP29016 333 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 SSTR5P35346 364 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 ZNF93P35789 620 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-213ENST00000493475 KRTAP10-11P60412 298 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 FOXE3Q13461 319 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 GPR50Q13585 617 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 NHLRC3Q5JS37 347 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 ATAD3CQ5T2N8 411 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 C6orf183Q5T699 404 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 RPL22L1Q6P5R6 122 aaKnown RBP9.15□□□□□ -0.94
COL6A3-213ENST00000493475 TMEM65Q6PI78 240 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 C10orf99Q6UWK7 81 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 SUMF2Q8NBJ7 301 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 OR52N1Q8NH53 320 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 PYDC1Q8WXC3 89 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 LEAP2Q969E1 77 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 ARL11Q969Q4 196 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 TMEM106AQ96A25 262 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 NOL4LQ96MY1 436 aaPredicted RBP9.15□□□□□ -0.94
COL6A3-213ENST00000493475 PDCD1LG2Q9BQ51 273 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 CHCHD6Q9BRQ6 235 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 ABCG5Q9H222 651 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 IL36GQ9NZH8 169 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 GNG12Q9UBI6 72 aa9.15□□□□□ -0.94
COL6A3-213ENST00000493475 MCRIP1C9JLW8 97 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 H0YHG0 523 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 AIPO00170 330 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 BDKRB2P30411 391 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 GPR12P47775 334 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 SOX2P48431 317 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 RBM11P57052 281 aaKnown RBP9.14□□□□□ -0.95
COL6A3-213ENST00000493475 RIPK1Q13546 671 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 EBI3Q14213 229 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 PIGYQ3MUY2 71 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 DDI2Q5TDH0 399 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 CBR4Q8N4T8 237 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 LINC00311Q8N616 119 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 ZNF555Q8NEP9 628 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 Q8NFD4 153 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 OR10K1Q8NGX5 313 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 MRPS24Q96EL2 167 aaKnown RBP9.14□□□□□ -0.95
COL6A3-213ENST00000493475 EAF1Q96JC9 268 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-213ENST00000493475 P2RX4Q99571 388 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 ISG20L2Q9H9L3 353 aaKnown RBP9.14□□□□□ -0.95
COL6A3-213ENST00000493475 TRAPPC2LQ9UL33 140 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 ERGIC3Q9Y282 383 aa9.14□□□□□ -0.95
COL6A3-213ENST00000493475 CA11O75493 328 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 SERPINA2P20848 420 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 DCKP27707 260 aa9.13□□□□□ -0.95
COL6A3-213ENST00000493475 SOX6P35712 828 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms