RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 PITX3O75364 302 aa11.15□□□□□ -0.62
SHOX2-205ENST00000490689 HSPB1P04792 205 aaKnown RBP11.15□□□□□ -0.62
SHOX2-205ENST00000490689 CXCL1P09341 107 aa11.15□□□□□ -0.62
SHOX2-205ENST00000490689 PRAMEF5Q5TYX0 476 aa11.15□□□□□ -0.62
SHOX2-205ENST00000490689 PRAMEF6Q5VXH4 476 aa11.15□□□□□ -0.62
SHOX2-205ENST00000490689 LINC00696Q6ZRV3 163 aa11.15□□□□□ -0.62
SHOX2-205ENST00000490689 TBX15Q96SF7 602 aa11.15□□□□□ -0.62
SHOX2-205ENST00000490689 DDA1Q9BW61 102 aa11.15□□□□□ -0.62
SHOX2-205ENST00000490689 LIN7CQ9NUP9 197 aaKnown RBP11.15□□□□□ -0.62
SHOX2-205ENST00000490689 ABCA1O95477 2261 aa11.15□□□□□ -0.62
SHOX2-205ENST00000490689 CYB5R3P00387 301 aaPredicted RBP11.15□□□□□ -0.63
SHOX2-205ENST00000490689 IGHV3-13P01766 116 aa11.15□□□□□ -0.63
SHOX2-205ENST00000490689 IGHV3-7P01780 117 aa11.15□□□□□ -0.63
SHOX2-205ENST00000490689 PRDX4Q13162 271 aa11.15□□□□□ -0.63
SHOX2-205ENST00000490689 RASL10BQ96S79 203 aa11.15□□□□□ -0.63
SHOX2-205ENST00000490689 IER2Q9BTL4 223 aa11.15□□□□□ -0.63
SHOX2-205ENST00000490689 RPRMQ9NS64 109 aa11.15□□□□□ -0.63
SHOX2-205ENST00000490689 SRP19P09132 144 aaKnown RBP11.14□□□□□ -0.63
SHOX2-205ENST00000490689 ZNF17P17021 662 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 BCL3P20749 454 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 SLC35E3Q7Z769 313 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 CXorf67Q86X51 503 aaPredicted RBP11.14□□□□□ -0.63
SHOX2-205ENST00000490689 OR1P1Q8NH06 330 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 WBP1Q96G27 269 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 BOD1Q96IK1 185 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 AQP7P3A6NL99 342 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 GLB1P16278 677 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 EGR1P18146 543 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 GPX4P36969 197 aaPredicted RBP11.14□□□□□ -0.63
SHOX2-205ENST00000490689 CEACAM6P40199 344 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 LSM6P62312 80 aaKnown RBP11.14□□□□□ -0.63
SHOX2-205ENST00000490689 ARG2P78540 354 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 PAX5Q02548 391 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 MRGPRGQ86SM5 289 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 TMEM222Q9H0R3 208 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 AKAP6Q13023 2319 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 TRIOBPQ9H2D6 2365 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 TRBV6-7A0A0A0MS04 114 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 IGKV1-9A0A0C4DH69 117 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 ACTL6BO94805 426 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 HIST1H1BP16401 226 aaKnown RBP11.14□□□□□ -0.63
SHOX2-205ENST00000490689 SUMO1P63165 101 aaKnown RBP11.14□□□□□ -0.63
SHOX2-205ENST00000490689 HIKESHIQ53FT3 197 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 ASPHD2Q6ICH7 369 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 VN1R17PQ8TDU5 208 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 GINS3Q9BRX5 216 aa11.14□□□□□ -0.63
SHOX2-205ENST00000490689 DEFB108AA8MXU0 73 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 IGKV3-11P04433 115 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 TPPP2P59282 170 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 ZP4Q12836 540 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 RTP5Q14D33 572 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 SSX7Q7RTT5 188 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 NEIL1Q96FI4 390 aaPredicted RBP11.13□□□□□ -0.63
SHOX2-205ENST00000490689 SMOC1Q9H4F8 434 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 PISDQ9UG56 409 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 FCN1O00602 326 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 LDLRAD4O15165 306 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 WISP1O95388 367 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 SNRPCP09234 159 aaKnown RBP11.13□□□□□ -0.63
SHOX2-205ENST00000490689 FKBP2P26885 142 aaKnown RBP11.13□□□□□ -0.63
SHOX2-205ENST00000490689 ERVFC1-1P60608 527 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 CTAG1AP78358 180 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 PLPPR5Q32ZL2 321 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 PHYHD1Q5SRE7 291 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 HEPN1Q6WQI6 88 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 CMTM2Q8TAZ6 248 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 SCARF2Q96GP6 870 aaPredicted RBP11.13□□□□□ -0.63
SHOX2-205ENST00000490689 SMDT1Q9H4I9 107 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 TINAGQ9UJW2 476 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 CBY3A6NI87 242 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 C11orf94C9JXX5 98 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 CA6P23280 308 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 HIPK2Q9H2X6 1198 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 RBKSQ9H477 322 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 TUBA4BQ9H853 241 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 ALPK3Q96L96 1907 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.13□□□□□ -0.63
SHOX2-205ENST00000490689 DUXBA0A1W2PPF3 345 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 TRAF3IP2O43734 574 aaPredicted RBP11.13□□□□□ -0.63
SHOX2-205ENST00000490689 SOD3P08294 240 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 NPBWR2P48146 333 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 IGLV3-21P80748 117 aaPredicted RBP11.13□□□□□ -0.63
SHOX2-205ENST00000490689 ETFRF1Q6IPR1 90 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 TIPARPQ7Z3E1 657 aaKnown RBP11.13□□□□□ -0.63
SHOX2-205ENST00000490689 RABEPKQ7Z6M1 372 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 H1FOOQ8IZA3 346 aaPredicted RBP11.13□□□□□ -0.63
SHOX2-205ENST00000490689 CNEP1R1Q8N9A8 125 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 OR10V1Q8NGI7 309 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 Q96M66 194 aa11.13□□□□□ -0.63
SHOX2-205ENST00000490689 PIAS2O75928 621 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 RAB4AP20338 218 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 TCL1AP56279 114 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 HYAL1Q12794 435 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 VAMP3Q15836 100 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 OR10S1Q8NGN2 331 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 ZNF524Q96C55 264 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 PLA2G3Q9NZ20 509 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 NAT8BQ9UHF3 227 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 NOTCH4Q99466 2003 aa11.12□□□□□ -0.63
SHOX2-205ENST00000490689 SHISA7A6NL88 538 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms