RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 OR5B12Q96R08 314 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 ALX4Q9H161 411 aaPredicted RBP11.87□□□□□ -0.51
MCF2L-228ENST00000487354 NEK6Q9HC98 313 aa11.87□□□□□ -0.51
MCF2L-228ENST00000487354 NKX1-2Q9UD57 310 aaPredicted RBP11.87□□□□□ -0.51
MCF2L-228ENST00000487354 G3V318 75 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 OVOL1O14753 267 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 SOX6P35712 828 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 VEGFCP49767 419 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 ZSCAN26Q16670 478 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 PIGYQ3MUY2 71 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 C8orf31Q8N9H6 132 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 UBALD1Q8TB05 177 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 DLX4Q92988 240 aaPredicted RBP11.86□□□□□ -0.51
MCF2L-228ENST00000487354 RASL11BQ9BPW5 248 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 TPSG1Q9NRR2 321 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 HERC2O95714 4834 aa11.86□□□□□ -0.51
MCF2L-228ENST00000487354 TNCP24821 2201 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 MAGEA13PA6NCF6 341 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 FAM90A10PA6NDY2 464 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 OR4C45A6NMZ5 311 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 J3QRE1 110 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 SAP30O75446 220 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 HOXB6P17509 224 aaKnown RBP11.85□□□□□ -0.51
MCF2L-228ENST00000487354 SLURP1P55000 103 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 IL13RA2Q14627 380 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 KISS1Q15726 138 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 KDM4DQ6B0I6 523 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 FAM220AQ7Z4H9 259 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 Q8N1Y9 231 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 ZNF439Q8NDP4 499 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 OR8H1Q8NGG4 311 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 ISOC1Q96CN7 298 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 NR1H4Q96RI1 486 aaPredicted RBP11.85□□□□□ -0.51
MCF2L-228ENST00000487354 BARHL1Q9BZE3 327 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 ZCCHC4Q9H5U6 513 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 KRT84Q9NSB2 600 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 C19orf73Q9NVV2 129 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 VSIG4Q9Y279 399 aa11.85□□□□□ -0.51
MCF2L-228ENST00000487354 IGHV4-30-4P0DP06 118 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 TMEM225BP0DP42 221 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 SLC2A2P11168 524 aaPredicted RBP11.84□□□□□ -0.51
MCF2L-228ENST00000487354 DBTP11182 482 aaKnown RBP11.84□□□□□ -0.51
MCF2L-228ENST00000487354 CALB2P22676 271 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 POLR2IP36954 125 aaKnown RBP11.84□□□□□ -0.51
MCF2L-228ENST00000487354 ZNF137PP52743 207 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 C19orf54Q5BKX5 351 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 ZNF691Q5VV52 312 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 ACSM6Q6P461 480 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 PXT1Q8NFP0 134 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 OR52M1Q8NGK5 317 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 OR13C3Q8NGS6 347 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 EME1Q96AY2 570 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 GFOD1Q9NXC2 390 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 ZNF107Q9UII5 783 aaPredicted RBP11.84□□□□□ -0.51
MCF2L-228ENST00000487354 WSB1Q9Y6I7 421 aa11.84□□□□□ -0.51
MCF2L-228ENST00000487354 IGHV3-43A0A0B4J1X8 118 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 A8MZ25 164 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 GABRPO00591 440 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 LDLRAD4O15165 306 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 ATP6V0E1O15342 81 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 SULT1B1O43704 296 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 OR5H8P0DN80 308 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 IGHV3-43DP0DP04 118 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 KCNJ3P48549 501 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 CCR9P51686 369 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 ZNF134P52741 427 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 LPCAT4Q643R3 524 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 HAPLN4Q86UW8 402 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 SPATA24Q86W54 205 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 SUMF2Q8NBJ7 301 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 OR10K1Q8NGX5 313 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 ARPC1AQ92747 370 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 PELI1Q96FA3 418 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 RITA1Q96K30 269 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 THTPAQ9BU02 230 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 DPCDQ9BVM2 203 aaPredicted RBP11.83□□□□□ -0.52
MCF2L-228ENST00000487354 GABARAPL1Q9H0R8 117 aa11.83□□□□□ -0.52
MCF2L-228ENST00000487354 SDCBPO00560 298 aaPredicted RBP11.82□□□□□ -0.52
MCF2L-228ENST00000487354 SOX15O60248 233 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 OCM2P0CE71 109 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 OCMP0CE72 109 aaPredicted RBP11.82□□□□□ -0.52
MCF2L-228ENST00000487354 MYF6P23409 242 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 RAB9AP51151 201 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 GYS2P54840 703 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 NDPQ00604 133 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 GABPB1Q06547 395 aaPredicted RBP11.82□□□□□ -0.52
MCF2L-228ENST00000487354 SRSF7Q16629 238 aaKnown RBP eCLIP11.82□□□□□ -0.52
MCF2L-228ENST00000487354 ZNF529Q6P280 563 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 ASCL4Q6XD76 172 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 SLC25A48Q6ZT89 311 aaKnown RBP11.82□□□□□ -0.52
MCF2L-228ENST00000487354 PARP16Q8N5Y8 322 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 MINDY2Q8NBR6 621 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 OR51A2Q8NGJ7 313 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 CHCHD6Q9BRQ6 235 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 TOLLIPQ9H0E2 274 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 OR51J1Q9H342 316 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 IFT22Q9H7X7 185 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 FBXO7Q9Y3I1 522 aa11.82□□□□□ -0.52
MCF2L-228ENST00000487354 IGHV4OR15-8A0A075B7B6 117 aa11.81□□□□□ -0.52
MCF2L-228ENST00000487354 A0A087WW49 117 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms