RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ZNF295-AS1Q8N0V1 137 aa11.89□□□□□ -0.51
CUX1-209ENST00000487284 Q8TCH9 128 aa11.89□□□□□ -0.51
CUX1-209ENST00000487284 ERGIC1Q969X5 290 aa11.89□□□□□ -0.51
CUX1-209ENST00000487284 DYNLRB1Q9NP97 96 aa11.89□□□□□ -0.51
CUX1-209ENST00000487284 SLC23A1Q9UHI7 598 aa11.89□□□□□ -0.51
CUX1-209ENST00000487284 MGAT4AQ9UM21 535 aa11.89□□□□□ -0.51
CUX1-209ENST00000487284 C14orf166Q9Y224 244 aaKnown RBP11.89□□□□□ -0.51
CUX1-209ENST00000487284 FBN2P35556 2912 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 IGKV1-6A0A0C4DH72 117 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 RFPL4AA6NLU0 287 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 RFPL4AL1F8VTS6 287 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 GOSR2O14653 212 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 PSPNO60542 156 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 RPS2P15880 293 aaKnown RBP11.88□□□□□ -0.51
CUX1-209ENST00000487284 RCC1P18754 421 aaPredicted RBP11.88□□□□□ -0.51
CUX1-209ENST00000487284 VAMP1P23763 118 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 CD34P28906 385 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 RAP2BP61225 183 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 SEC61A1P61619 476 aaKnown RBP11.88□□□□□ -0.51
CUX1-209ENST00000487284 SUPT4H1P63272 117 aaKnown RBP11.88□□□□□ -0.51
CUX1-209ENST00000487284 ATXN7L3Q14CW9 347 aaPredicted RBP11.88□□□□□ -0.51
CUX1-209ENST00000487284 C11orf71Q6IPW1 123 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 DTX2Q86UW9 622 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 OR4A4PQ8NGN8 299 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 ZFAND1Q8TCF1 268 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 ASB13Q8WXK3 278 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 ZNF486Q96H40 463 aaPredicted RBP11.88□□□□□ -0.51
CUX1-209ENST00000487284 HYLS1Q96M11 299 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 CABLES2Q9BTV7 478 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 GCM1Q9NP62 436 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 CBLN4Q9NTU7 201 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 MBNL3Q9NUK0 354 aaKnown RBP11.88□□□□□ -0.51
CUX1-209ENST00000487284 LAMP3Q9UQV4 416 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 WIPI2Q9Y4P8 454 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 NBPF19A0A087WUL8 3843 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 A0A0B4J2A0 478 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 G3V3Q6 166 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 TUSC2O75896 110 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 SLC22A5O76082 557 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 ZNF205O95201 554 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 SFT2D2O95562 160 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 TK1P04183 234 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 ZNF728P0DKX0 622 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 PSG2P11465 335 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 HLA-GP17693 338 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 AADACP22760 399 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 OR3A1P47881 315 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 H2BFSP57053 126 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 PAX5Q02548 391 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 SLC35E4Q6ICL7 350 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 CD177Q8N6Q3 437 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 UXS1Q8NBZ7 420 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 PHB2Q99623 299 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 TMPRSS13Q9BYE2 586 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 MS4A5Q9H3V2 200 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 RANBP3Q9H6Z4 567 aaPredicted RBP11.88□□□□□ -0.51
CUX1-209ENST00000487284 PLEKHF2Q9H8W4 249 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 SHPKQ9UHJ6 478 aa11.88□□□□□ -0.51
CUX1-209ENST00000487284 ABCA12Q86UK0 2595 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 IGKV1D-17A0A075B6S4 117 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 TMEM30CPA0ZSE6 113 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 FAM172BPA6NC97 362 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 NPIPB11E5RHQ5 1161 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 PPYP01298 95 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 NFYAP23511 347 aaPredicted RBP11.87□□□□□ -0.51
CUX1-209ENST00000487284 HERV-K104P61576 105 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 CCL8P80075 99 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 COL10A1Q03692 680 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 TESK1Q15569 626 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 LY6G6FQ5SQ64 297 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 DCAF12L2Q5VW00 463 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 HIST2H2BCQ6DN03 193 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 LPCAT3Q6P1A2 487 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 C5orf24Q7Z6I8 188 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 OR5M8Q8NGP6 311 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 OR2T35Q8NGX2 323 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 CHIAQ9BZP6 476 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 RNF7Q9UBF6 113 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 OPN4Q9UHM6 478 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 METRNQ9UJH8 293 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 PCDHB10Q9UN67 800 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 SPG11Q96JI7 2443 aa11.87□□□□□ -0.51
CUX1-209ENST00000487284 TRBV6-7A0A0A0MS04 114 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 DBX1A6NMT0 343 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 ZNF737O75373 536 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 SIX6O95475 246 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 DIRAS3O95661 229 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 PRDX2P32119 198 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 RBMXP38159 391 aaKnown RBP11.86□□□□□ -0.51
CUX1-209ENST00000487284 FXYD4P59646 89 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 SRSF4Q08170 494 aaKnown RBP11.86□□□□□ -0.51
CUX1-209ENST00000487284 HMGN3Q15651 99 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 FAM209AQ5JX71 171 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 SLC38A6Q8IZM9 456 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 OR11L1Q8NGX0 322 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 CASTOR1Q8WTX7 329 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 TOMM40LQ969M1 308 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 COQ2Q96H96 371 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 VRK1Q99986 396 aaPredicted RBP11.86□□□□□ -0.51
CUX1-209ENST00000487284 RSRP1Q9BUV0 290 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms