RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 FOXS1O43638 330 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 IL6RP08887 468 aaPredicted RBP5.4□□□□□ -1.54
VPS13D-209ENST00000487188 CRISP2P16562 243 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 KITLGP21583 273 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 RPL19P84098 196 aaKnown RBP5.4□□□□□ -1.54
VPS13D-209ENST00000487188 HHEXQ03014 270 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 ATP6V1FQ16864 119 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 OR5L2Q8NGL0 311 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 THAP3Q8WTV1 239 aaPredicted RBP5.4□□□□□ -1.54
VPS13D-209ENST00000487188 STARD4Q96DR4 205 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 Q96M66 194 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 GPHA2Q96T91 129 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 C20orf144Q9BQM9 153 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 ALKBH7Q9BT30 221 aaPredicted RBP5.4□□□□□ -1.54
VPS13D-209ENST00000487188 RTN4RQ9BZR6 473 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 PLEK2Q9NYT0 353 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 CDH23Q9H251 3354 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 MS4A18H0YCH9 400 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 ITGB1BP1O14713 200 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 TNFP01375 233 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 IL3RAP26951 378 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 KLF3P57682 345 aaPredicted RBP5.4□□□□□ -1.54
VPS13D-209ENST00000487188 PMP22Q01453 160 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 MFAP5Q13361 173 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 C1orf61Q13536 156 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 MS4A18Q3C1V0 323 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 SPATA45Q537H7 98 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 SPANXN5Q5MJ07 72 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 RABEPKQ7Z6M1 372 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 SELENOHQ8IZQ5 122 aaKnown RBP5.4□□□□□ -1.54
VPS13D-209ENST00000487188 ZNF738Q8NE65 137 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 RNASE8Q8TDE3 154 aaKnown RBP5.4□□□□□ -1.54
VPS13D-209ENST00000487188 SLC37A2Q8TED4 501 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 APH1AQ96BI3 265 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 RAB40CQ96S21 281 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 PARD6GQ9BYG4 376 aaPredicted RBP5.4□□□□□ -1.54
VPS13D-209ENST00000487188 VSIRQ9H7M9 311 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 ALKBH4Q9NXW9 302 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 RNF24Q9Y225 148 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 WIPI2Q9Y4P8 454 aa5.4□□□□□ -1.54
VPS13D-209ENST00000487188 ZNF816-ZNF321PA0A0X1KG74 233 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 A0A1W2PR80 420 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 OTOL1A6NHN0 477 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-209ENST00000487188 DIRC3C9JPN6 131 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 LILRB3O75022 631 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 PDLIM4P50479 330 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 ZNF90Q03938 601 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 NSDHLQ15738 373 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 C9orf40Q8IXQ3 194 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 SPTSSAQ969W0 71 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 ZNF319Q9P2F9 582 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 UQCR10Q9UDW1 63 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 ST3GAL6Q9Y274 331 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 MYO7BQ6PIF6 2116 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 SHISA8B8ZZ34 492 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 F6UZH7 168 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 PMCHP20382 165 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 GCH1P30793 250 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 HINT1P49773 126 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-209ENST00000487188 MMDQ15546 238 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 PIGYQ3MUY2 71 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 ZNF468Q5VIY5 522 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-209ENST00000487188 GAPTQ8N292 157 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 OSR2Q8N2R0 312 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 KLHDC1Q8N7A1 406 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 C12orf76Q8N812 135 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-209ENST00000487188 LIME1Q9H400 295 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 BET1LQ9NYM9 111 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 B3GAT1Q9P2W7 334 aa5.4□□□□□ -1.55
VPS13D-209ENST00000487188 SHANK1Q9Y566 2161 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 PIGBOS1A0A0B4J2F0 54 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 TMEM250H0YL14 139 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 RBMXL2O75526 392 aaKnown RBP5.39□□□□□ -1.55
VPS13D-209ENST00000487188 CLDN1O95832 211 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 CXCL10P02778 98 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 BMP5P22003 454 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 BPIFB3P59826 476 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 LCN2P80188 198 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 IGLV3-21P80748 117 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-209ENST00000487188 FOXF1Q12946 379 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 WDYHV1Q96HA8 205 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 PYGO2Q9BRQ0 406 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 GPR35Q9HC97 309 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 SLC7A10Q9NS82 523 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 KCNS2Q9ULS6 477 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 PPIAL4AQ9Y536 164 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 DOCK11Q5JSL3 2073 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 ZNF814B7Z6K7 855 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 M0R135 149 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 HSPB6O14558 160 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 PAGE4O60829 102 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 HNRNPA1P09651 372 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS13D-209ENST00000487188 UBE2G2P60604 165 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 SERF2P84101 59 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 HTD2P86397 168 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 ZFP36L1Q07352 338 aaKnown RBP5.39□□□□□ -1.55
VPS13D-209ENST00000487188 CALHM1Q8IU99 346 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 OR1L6Q8NGR2 347 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 OR1N1Q8NGS0 311 aa5.39□□□□□ -1.55
VPS13D-209ENST00000487188 SGMS2Q8NHU3 365 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms