RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PDCD1Q15116 288 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 MICBQ29980 383 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 ZNF57Q68EA5 555 aaPredicted RBP14.06□□□□□ -0.16
VIM-205ENST00000485947 TRAPPC6BQ86SZ2 158 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 SUMF2Q8NBJ7 301 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 NUDCD2Q8WVJ2 157 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 SLC6A7Q99884 636 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 CMSS1Q9BQ75 279 aaKnown RBP14.06□□□□□ -0.16
VIM-205ENST00000485947 OCSTAMPQ9BR26 566 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 C7orf50Q9BRJ6 194 aaKnown RBP14.06□□□□□ -0.16
VIM-205ENST00000485947 FAAP24Q9BTP7 215 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 DPCDQ9BVM2 203 aaPredicted RBP14.06□□□□□ -0.16
VIM-205ENST00000485947 ZNF581Q9P0T4 197 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 KLK11Q9UBX7 282 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 OR14J1Q9UGF5 321 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 ELF5Q9UKW6 265 aaPredicted RBP14.06□□□□□ -0.16
VIM-205ENST00000485947 ANAPC10Q9UM13 185 aa14.06□□□□□ -0.16
VIM-205ENST00000485947 TRAV24A0A0B4J272 114 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 ANKRD20A5PA0PJZ0 165 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 RFPL4AA6NLU0 287 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 POM121CA8CG34 1229 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 RFPL4AL1F8VTS6 287 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 SLC33A1O00400 549 aaPredicted RBP14.05□□□□□ -0.16
VIM-205ENST00000485947 SSX5O60225 188 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 PSG2P11465 335 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 DTYMKP23919 212 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 PAN3Q58A45 887 aaKnown RBP14.05□□□□□ -0.16
VIM-205ENST00000485947 KLF17Q5JT82 389 aaPredicted RBP14.05□□□□□ -0.16
VIM-205ENST00000485947 OLFML2AQ68BL7 652 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 LYPD2Q6UXB3 125 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 RTN4RL2Q86UN3 420 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.05□□□□□ -0.16
VIM-205ENST00000485947 BOLLQ8N9W6 283 aaKnown RBP14.05□□□□□ -0.16
VIM-205ENST00000485947 PPP1R35Q8TAP8 253 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 CHST6Q9GZX3 395 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 DNTTIP1Q9H147 329 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 RIMS4Q9H426 269 aaPredicted RBP14.05□□□□□ -0.16
VIM-205ENST00000485947 IFT46Q9NQC8 304 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 AK3Q9UIJ7 227 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 ARHGAP32A7KAX9 2087 aa14.05□□□□□ -0.16
VIM-205ENST00000485947 UBE2QL1A1L167 161 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 TMEM89A2RUT3 159 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 C3orf80F5H4A9 247 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 CLDN34H7C241 214 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 SIRPB1O00241 398 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 ADAM20O43506 726 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 NAT1P18440 290 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 PRDX2P32119 198 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 RBMXP38159 391 aaKnown RBP14.04□□□□□ -0.16
VIM-205ENST00000485947 KLF9Q13886 244 aaPredicted RBP14.04□□□□□ -0.16
VIM-205ENST00000485947 RGS21Q2M5E4 152 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 STUMQ69YW2 141 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 SFRP4Q6FHJ7 346 aaPredicted RBP14.04□□□□□ -0.16
VIM-205ENST00000485947 C12orf54Q6X4T0 127 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 SLC36A1Q7Z2H8 476 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 POC5Q8NA72 575 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 TMEM229BQ8NBD8 167 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 NEK7Q8TDX7 302 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 MS4A7Q9GZW8 240 aaPredicted RBP14.04□□□□□ -0.16
VIM-205ENST00000485947 C12orf4Q9NQ89 552 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 ETAA1Q9NY74 926 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 ZNF222Q9UK12 451 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 TBC1D24Q9ULP9 559 aa14.04□□□□□ -0.16
VIM-205ENST00000485947 IGKV1D-17A0A075B6S4 117 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 CENPXA8MT69 81 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 FAUP35544 74 aaKnown RBP14.03□□□□□ -0.16
VIM-205ENST00000485947 TAS2R19P59542 299 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 COL10A1Q03692 680 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 SRSF7Q16629 238 aaKnown RBP eCLIP14.03□□□□□ -0.16
VIM-205ENST00000485947 ATPAF1Q5TC12 328 aaPredicted RBP14.03□□□□□ -0.16
VIM-205ENST00000485947 HOGA1Q86XE5 327 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 CD177Q8N6Q3 437 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 ZDHHC22Q8N966 263 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 MINDY2Q8NBR6 621 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 ANGPTL6Q8NI99 470 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 SDSLQ96GA7 329 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 ZNF69Q9UC07 566 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 DOCK11Q5JSL3 2073 aa14.03□□□□□ -0.16
VIM-205ENST00000485947 IGHV3OR15-7A0A075B7D8 119 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 TRBV6-6A0A0A6YYG2 114 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 MEIS3P1A6NDR6 274 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 NAP1L6A6NFF2 107 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 NKX6-3A6NJ46 265 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 PLA2G10O15496 165 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 LYRM1O43325 122 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 PTTG1O95997 202 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 NAPSAO96009 420 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 CSN2P05814 226 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 FCGR3AP08637 254 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 TBPP20226 339 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 PRTN3P24158 256 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 CEBPDP49716 269 aaPredicted RBP14.02□□□□□ -0.17
VIM-205ENST00000485947 UBA52P62987 128 aaKnown RBP14.02□□□□□ -0.17
VIM-205ENST00000485947 HOXA4Q00056 320 aaPredicted RBP14.02□□□□□ -0.17
VIM-205ENST00000485947 PAX5Q02548 391 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 ACTBL2Q562R1 376 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 MZT2BQ6NZ67 158 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 BRICD5Q6PL45 260 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 ZNF561Q8N587 486 aa14.02□□□□□ -0.17
VIM-205ENST00000485947 SNX22Q96L94 193 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms