RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 KIF25Q9UIL4 384 aa6.59□□□□□ -1.35
USP40-216ENST00000485943 PITPNC1Q9UKF7 332 aa6.59□□□□□ -1.35
USP40-216ENST00000485943 LSM2Q9Y333 95 aaKnown RBP6.59□□□□□ -1.35
USP40-216ENST00000485943 TBL2Q9Y4P3 447 aaKnown RBP6.59□□□□□ -1.35
USP40-216ENST00000485943 POMT1Q9Y6A1 747 aa6.59□□□□□ -1.35
USP40-216ENST00000485943 JMJD1CQ15652 2540 aa6.59□□□□□ -1.35
USP40-216ENST00000485943 A0A075B6Q4 140 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 A0A0U1RQK1 487 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 MDFIC2A0A1B0GVS7 189 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 TRDV1A0A1B0GX56 115 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A10PA6NDY2 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A18PA6NE21 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A16PA6NEW6 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A20PA6NIJ5 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A8PA6NJQ4 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A7PA6NKC0 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A22PA8MWA6 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A12PA8MX19 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A5PA8MXJ8 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A23PA8MXZ1 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 LEUTXA8MZ59 168 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 RNASEK-C17orf49H0YIS7 233 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 SDCBPO00560 298 aaPredicted RBP6.58□□□□□ -1.36
USP40-216ENST00000485943 SLC17A2O00624 439 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 PDCD6O75340 191 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 ZNF737O75373 536 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 CA11O75493 328 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 RGS11O94810 467 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 CD3GP09693 182 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A15PP0C7V4 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A13PP0C7W8 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A14PP0C7W9 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM90A24PP0C7X0 464 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 MMP9P14780 707 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 GALP22466 123 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 OMGP23515 440 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 GNG10P50151 68 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 UBA52P62987 128 aaKnown RBP6.58□□□□□ -1.36
USP40-216ENST00000485943 PAX2Q02962 417 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 MXD1Q05195 221 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 ARFRP1Q13795 201 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 HES1Q14469 280 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 ARL6IP1Q15041 203 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 SSX2Q16385 188 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 LRRC75BQ2VPJ9 315 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 KRTAP21-3Q3LHN1 58 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 KLF17Q5JT82 389 aaPredicted RBP6.58□□□□□ -1.36
USP40-216ENST00000485943 UBE2UQ5VVX9 321 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 SLC35E4Q6ICL7 350 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 CCDC144NLQ6NUI1 221 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 ZNF529Q6P280 563 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 C16orf87Q6PH81 154 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 UNQ9370/PRO34162Q6UXP9 181 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 C9orf139Q6ZV77 190 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 OR2W3Q7Z3T1 314 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 OR4K15Q8NH41 348 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM216AQ8WUB2 273 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 TOMM40LQ969M1 308 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 ARL11Q969Q4 196 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 FAM3DQ96BQ1 224 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 SSX3Q99909 188 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 TMEM133Q9H2Q1 129 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 IDI2-AS1Q9NZ38 188 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 STEAP1Q9UHE8 339 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 RBM7Q9Y580 266 aaKnown RBP6.58□□□□□ -1.36
USP40-216ENST00000485943 HILPDAQ9Y5L2 63 aa6.58□□□□□ -1.36
USP40-216ENST00000485943 IGHV2-26A0A0B4J1V2 119 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 TRAV1-2A0A0B4J238 106 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 TRAV24A0A0B4J272 114 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 KBTBD11-OT1A0A1B0GTJ5 212 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 A0A1W2PP11 408 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 SMIM30A4D0T7 59 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 C17orf98A8MV24 154 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 H3BUX3 64 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 PIN1P1O15428 100 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 AIREO43918 545 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 SCGNO76038 276 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 VENTXO95231 258 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 GLAP06280 429 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 LMO1P25800 156 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 VEGFCP49767 419 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 DLX1P56177 255 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 CLDN12P56749 244 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 LY6EQ16553 131 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 NHLRC3Q5JS37 347 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 SYT6Q5T7P8 510 aaPredicted RBP6.57□□□□□ -1.36
USP40-216ENST00000485943 OR10K2Q6IF99 312 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 Q6P435 159 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 Q6YL49 198 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 Q6ZTK2 550 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 RNF144BQ7Z419 303 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 TPRA1Q86W33 373 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 CROCCP3Q8IVE0 287 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 TMEM86BQ8N661 226 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 OR51D1Q8NGF3 324 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 OR4F5Q8NH21 305 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 RFESDQ8TAC1 157 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 IL1F10Q8WWZ1 152 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 MALSU1Q96EH3 234 aa6.57□□□□□ -1.36
USP40-216ENST00000485943 ATG5Q9H1Y0 275 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms