RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	SLC35E4	Q6ICL7	350 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	CCBE1	Q6UXH8	406 aa	Predicted RBP	4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	ZNF497	Q6ZNH5	498 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	GDPD3	Q7L5L3	318 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	SPART	Q8N0X7	666 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792		Q8N1Y9	231 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792		Q8N2B8	174 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	OSR2	Q8N2R0	312 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	C8orf31	Q8N9H6	132 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	ASCC1	Q8N9N2	400 aa	Known RBP	4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	SUMF2	Q8NBJ7	301 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	OR4P4	Q8NGL7	312 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	OR5R1	Q8NH85	324 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	PPP1R35	Q8TAP8	253 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	WIPF2	Q8TF74	440 aa	Predicted RBP	4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	H1FX	Q92522	213 aa	Known RBP	4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	FOXRED1	Q96CU9	486 aa	Predicted RBP	4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	MALSU1	Q96EH3	234 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	ZNF714	Q96N38	554 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	ZNF747	Q9BV97	191 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	TM2D1	Q9BX74	207 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	SLITRK2	Q9H156	845 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	METTL9	Q9H1A3	318 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	TMEM133	Q9H2Q1	129 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	PCDHB16	Q9NRJ7	776 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	NDUFB11	Q9NX14	153 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	C1RL	Q9NZP8	487 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	GLS2	Q9UI32	602 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	FBXL7	Q9UJT9	491 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	MINOS1-NBL1	R4GNA1	71 aa		4.61	□□□□□ -1.67
CUX1-208	ENST00000485792	TRBV6-6	A0A0A6YYG2	114 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	IGHV2-26	A0A0B4J1V2	119 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792		A0A1B0GUS0	222 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	TRDV1	A0A1B0GX56	115 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	hCG_1809904	A0A1W2PP81	198 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792		A0A1W2PPE2	198 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792		A0A1W2PQ09	198 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792		A0A1W2PR64	198 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792		A0A1W2PRV1	198 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	MEIOC	A2RUB1	952 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	FUOM	A2VDF0	154 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	FAM172BP	A6NC97	362 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	ZNF729	A6NN14	1252 aa	Predicted RBP	4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	FAM90A9P	A6NNJ1	464 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	SIRPB1	O00241	398 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	F2RL2	O00254	374 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	SLC17A2	O00624	439 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	GEMIN2	O14893	280 aa	Known RBP	4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	MAGEB3	O15480	346 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	CA11	O75493	328 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	CLPX	O76031	633 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	NAPSA	O96009	420 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	MT-ND4	P03905	459 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	UBB	P0CG47	229 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	GTF2F2	P13984	249 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	GZMH	P20718	246 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	EEF1B2	P24534	225 aa	Known RBP	4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	GABRA5	P31644	462 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	TGFBR1	P36897	503 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	TMEM50B	P56557	158 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	PROK1	P58294	105 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	PPP3R1	P63098	170 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	BLMH	Q13867	455 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	HABP2	Q14520	560 aa	Predicted RBP	4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	RSU1	Q15404	277 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	MED22	Q15528	200 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792		Q3ZCU0	254 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	KRBOX4	Q5JUW0	171 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	LY6G6F	Q5SQ64	297 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	SYT6	Q5T7P8	510 aa	Predicted RBP	4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	ZNF880	Q6PDB4	577 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	GLIPR1L1	Q6UWM5	242 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	RBMS3	Q6XE24	437 aa	Known RBP	4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	ZNF782	Q6ZMW2	699 aa	Predicted RBP	4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	ZNF367	Q7RTV3	350 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	CEACAM19	Q7Z692	300 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	ZNF554	Q86TJ5	538 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	SATL1	Q86VE3	508 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	FAM185A	Q8N0U4	392 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	LINC00311	Q8N616	119 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	OR52M1	Q8NGK5	317 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	OR13A1	Q8NGR1	328 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	UFD1	Q92890	307 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	MUL1	Q969V5	352 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	ST6GALNAC6	Q969X2	333 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	CNBD2	Q96M20	576 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	DPCD	Q9BVM2	203 aa	Predicted RBP	4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	BARHL1	Q9BZE3	327 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	PPA2	Q9H2U2	334 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	DPAGT1	Q9H3H5	408 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	RNF167	Q9H6Y7	350 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	SPACA1	Q9HBV2	294 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	OR6C3	Q9NZP0	311 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	CKLF	Q9UBR5	152 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	KIF25	Q9UIL4	384 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	VPREB3	Q9UKI3	123 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	BLOC1S6	Q9UL45	172 aa		4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	MRPS28	Q9Y2Q9	187 aa	Known RBP	4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	TMA7	Q9Y2S6	64 aa	Known RBP	4.6	□□□□□ -1.67
CUX1-208	ENST00000485792	SESN1	Q9Y6P5	492 aa		4.6	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms