RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 TLE4Q04727 773 aa13.12□□□□□ -0.31
C9orf3-218ENST00000482056 EIF2S3LQ2VIR3 472 aaKnown RBP13.12□□□□□ -0.31
C9orf3-218ENST00000482056 RNASE11Q8TAA1 199 aaKnown RBP13.12□□□□□ -0.31
C9orf3-218ENST00000482056 IP6K3Q96PC2 410 aa13.12□□□□□ -0.31
C9orf3-218ENST00000482056 ATP5SQ99766 215 aa13.12□□□□□ -0.31
C9orf3-218ENST00000482056 SPRY4Q9C004 299 aa13.12□□□□□ -0.31
C9orf3-218ENST00000482056 GLRX2Q9NS18 164 aa13.12□□□□□ -0.31
C9orf3-218ENST00000482056 KIAA1456Q9P272 454 aa13.12□□□□□ -0.31
C9orf3-218ENST00000482056 A0A1W2PPH5 198 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 ZNF503-AS2A6NEH8 195 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 GPR37O15354 613 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 CST7O76096 145 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 S100A8P05109 93 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 AGAP20933 346 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 FOXG1P55316 489 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-218ENST00000482056 SNRPEP62304 92 aaKnown RBP13.11□□□□□ -0.31
C9orf3-218ENST00000482056 CLN3Q13286 438 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 CDCP2Q5VXM1 449 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 MOB1BQ7L9L4 216 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 TMEM251Q8N6I4 163 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 PLPPR1Q8TBJ4 325 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 TMEM171Q8WVE6 324 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 CABLES2Q9BTV7 478 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 HES7Q9BYE0 225 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 SMOC1Q9H4F8 434 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 IFT22Q9H7X7 185 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 FREM1Q5H8C1 2179 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 MED19A0JLT2 244 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-218ENST00000482056 C9orf172C9J069 976 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 HS3ST1O14792 307 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 TNFSF12O43508 249 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 IFNA5P01569 189 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 S100A9P06702 114 aaKnown RBP13.11□□□□□ -0.31
C9orf3-218ENST00000482056 MDH2P40926 338 aaKnown RBP13.11□□□□□ -0.31
C9orf3-218ENST00000482056 ZXDAP98168 799 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 ZNF880Q6PDB4 577 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 PCSK4Q6UW60 755 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 DBX2Q6ZNG2 339 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 H1FOOQ8IZA3 346 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-218ENST00000482056 TMEM217Q8N7C4 229 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 RDH5Q92781 318 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 RBMXL1Q96E39 390 aaKnown RBP13.11□□□□□ -0.31
C9orf3-218ENST00000482056 RAB40CQ96S21 281 aa13.11□□□□□ -0.31
C9orf3-218ENST00000482056 KLF13Q9Y2Y9 288 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-218ENST00000482056 A6NLC8 198 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 CDRT15L2A8MXV6 281 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 J3QT63 122 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 WNT2P09544 360 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 LPAL2Q16609 132 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 HIKESHIQ53FT3 197 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 DCAF10Q5QP82 559 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 ZNF324BQ6AW86 544 aaPredicted RBP13.1□□□□□ -0.31
C9orf3-218ENST00000482056 SLC25A24Q6NUK1 477 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 C5orf24Q7Z6I8 188 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 ISOC2Q96AB3 205 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 GPHA2Q96T91 129 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 RARRES2Q99969 163 aa13.1□□□□□ -0.31
C9orf3-218ENST00000482056 PUS1Q9Y606 427 aaKnown RBP eCLIP13.1□□□□□ -0.31
C9orf3-218ENST00000482056 TRAV24A0A0B4J272 114 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 C5orf52A6NGY3 159 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 NPIPB11E5RHQ5 1161 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 UBE2CO00762 179 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 ZNHIT1O43257 154 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 CNOT4O95628 575 aaKnown RBP13.09□□□□□ -0.31
C9orf3-218ENST00000482056 EPHA1P21709 976 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 SPSB3Q6PJ21 355 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 LINC00696Q6ZRV3 163 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 TMEM105Q8N8V8 129 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 OR10V1Q8NGI7 309 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 MALSU1Q96EH3 234 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 TCEAL7Q9BRU2 100 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 DLL3Q9NYJ7 618 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 PLA2G3Q9NZ20 509 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 TAAR3PQ9P1P4 343 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 ERRFI1Q9UJM3 462 aaPredicted RBP13.09□□□□□ -0.31
C9orf3-218ENST00000482056 KLRC4-KLRK1H3BQV0 150 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 EIF3GO75821 320 aaKnown RBP eCLIP13.09□□□□□ -0.31
C9orf3-218ENST00000482056 DAOP14920 347 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 TAS2R30P59541 319 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 ZNF154Q13106 437 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 NUFIP2Q7Z417 695 aaKnown RBP13.09□□□□□ -0.31
C9orf3-218ENST00000482056 Q8IYB0 196 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 OR51H1Q8NH63 302 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 ZNF488Q96MN9 340 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 RTL8AQ9BWD3 113 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 FOXJ2Q9P0K8 574 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 RNF115Q9Y4L5 304 aa13.09□□□□□ -0.31
C9orf3-218ENST00000482056 OR2C1O95371 312 aa13.08□□□□□ -0.32
C9orf3-218ENST00000482056 TMEM50AO95807 157 aa13.08□□□□□ -0.32
C9orf3-218ENST00000482056 IFNA17P01571 189 aa13.08□□□□□ -0.32
C9orf3-218ENST00000482056 HSPB1P04792 205 aaKnown RBP13.08□□□□□ -0.32
C9orf3-218ENST00000482056 SMIM6P0DI80 62 aa13.08□□□□□ -0.32
C9orf3-218ENST00000482056 HOXB1P14653 301 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-218ENST00000482056 MEOX1P50221 254 aa13.08□□□□□ -0.32
C9orf3-218ENST00000482056 CCL20P78556 96 aa13.08□□□□□ -0.32
C9orf3-218ENST00000482056 C20orf204Q6ZNR8 217 aa13.08□□□□□ -0.32
C9orf3-218ENST00000482056 FAM24BQ8N5W8 94 aa13.08□□□□□ -0.32
C9orf3-218ENST00000482056 OR1K1Q8NGR3 316 aa13.08□□□□□ -0.32
C9orf3-218ENST00000482056 LSM10Q969L4 123 aaKnown RBP13.08□□□□□ -0.32
C9orf3-218ENST00000482056 GPR146Q96CH1 333 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms