RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 UQCC2Q9BRT2 126 aa14.12□□□□□ -0.15
COL9A3-212ENST00000481800 SELENOIQ9C0D9 397 aa14.12□□□□□ -0.15
COL9A3-212ENST00000481800 BANF2Q9H503 90 aa14.12□□□□□ -0.15
COL9A3-212ENST00000481800 TPRKBQ9Y3C4 175 aa14.12□□□□□ -0.15
COL9A3-212ENST00000481800 PKD1L1Q8TDX9 2849 aa14.12□□□□□ -0.15
COL9A3-212ENST00000481800 AIPO00170 330 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 MT-ND4P03905 459 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 CD28P10747 220 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 EMX1Q04741 257 aaPredicted RBP14.11□□□□□ -0.15
COL9A3-212ENST00000481800 MED22Q15528 200 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 NSUN5P1Q3KNT7 163 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 ABCA11PQ4W5N1 156 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 ZNF497Q6ZNH5 498 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 LYG1Q8N1E2 194 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 NRG4Q8WWG1 115 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 TMED9Q9BVK6 235 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 WNT10AQ9GZT5 417 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 VCX3BQ9H321 246 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 RAB9BQ9NP90 201 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 ETAA1Q9NY74 926 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 TRAPPC2LQ9UL33 140 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 PEX16Q9Y5Y5 336 aa14.11□□□□□ -0.15
COL9A3-212ENST00000481800 DSCAML1Q8TD84 2053 aa14.1□□□□□ -0.15
COL9A3-212ENST00000481800 M0QZK8 103 aa14.1□□□□□ -0.15
COL9A3-212ENST00000481800 SDCBPO00560 298 aaPredicted RBP14.1□□□□□ -0.15
COL9A3-212ENST00000481800 MGMTP16455 207 aa14.1□□□□□ -0.15
COL9A3-212ENST00000481800 RAB7AP51149 207 aa14.1□□□□□ -0.15
COL9A3-212ENST00000481800 GPR50Q13585 617 aa14.1□□□□□ -0.15
COL9A3-212ENST00000481800 TMEM95Q3KNT9 176 aa14.1□□□□□ -0.15
COL9A3-212ENST00000481800 RAB12Q6IQ22 244 aa14.1□□□□□ -0.15
COL9A3-212ENST00000481800 CENPVQ7Z7K6 275 aaPredicted RBP14.1□□□□□ -0.15
COL9A3-212ENST00000481800 RCC2Q9P258 522 aaKnown RBP14.1□□□□□ -0.15
COL9A3-212ENST00000481800 GHRLQ9UBU3 117 aa14.1□□□□□ -0.15
COL9A3-212ENST00000481800 A0A1W2PPE3 182 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A10PA6NDY2 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A18PA6NE21 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A16PA6NEW6 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A20PA6NIJ5 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A7PA6NKC0 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A12PA8MX19 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A5PA8MXJ8 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A23PA8MXZ1 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 H0YHG0 523 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 ORC5O43913 435 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 LPLP06858 475 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A15PP0C7V4 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A13PP0C7W8 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A14PP0C7W9 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 FAM90A24PP0C7X0 464 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 HES1Q14469 280 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 INSL4Q14641 139 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 C9orf152Q5JTZ5 239 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 SYT6Q5T7P8 510 aaPredicted RBP14.09□□□□□ -0.15
COL9A3-212ENST00000481800 GLT8D1Q68CQ7 371 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 UNQ9370/PRO34162Q6UXP9 181 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 NDUFA11Q86Y39 141 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 THNSL2Q86YJ6 484 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 OR8H3Q8N146 312 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 TMEM104Q8NE00 496 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 OR52M1Q8NGK5 317 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 OR56B4Q8NH76 319 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 UBALD1Q8TB05 177 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 OCSTAMPQ9BR26 566 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 CST11Q9H112 138 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 MEGF8Q7Z7M0 2845 aa14.09□□□□□ -0.15
COL9A3-212ENST00000481800 C15orf65H3BRN8 121 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 SPINT2O43291 252 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 OPN1MWP04001 364 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 SNRNP70P08621 437 aaKnown RBP14.08□□□□□ -0.16
COL9A3-212ENST00000481800 UBBP0CG47 229 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 OPN1MW2P0DN77 364 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 OPN1MW3P0DN78 364 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 FUT3P21217 361 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 SLC35A2P78381 396 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 PDLIM3Q53GG5 364 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-212ENST00000481800 RBM48Q5RL73 367 aaKnown RBP14.08□□□□□ -0.16
COL9A3-212ENST00000481800 C6orf183Q5T699 404 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 CEACAM19Q7Z692 300 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 LYPD6Q86Y78 171 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 DRAM1Q8N682 238 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 OR5AU1Q8NGC0 362 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 OR4K15Q8NH41 348 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 UFD1Q92890 307 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 FAM46BQ96A09 425 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 CITED2Q99967 270 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-212ENST00000481800 LSM2Q9Y333 95 aaKnown RBP14.08□□□□□ -0.16
COL9A3-212ENST00000481800 MOB4Q9Y3A3 225 aa14.08□□□□□ -0.16
COL9A3-212ENST00000481800 IGHV3-43A0A0B4J1X8 118 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 FAM90A9PA6NNJ1 464 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 CCRL2O00421 344 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 HSD17B6O14756 317 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 RGS10O43665 173 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 CA11O75493 328 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 GAPDHP04406 335 aaKnown RBP14.07□□□□□ -0.16
COL9A3-212ENST00000481800 GLAP06280 429 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 HSMCR30P0CW71 290 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 IGHV3-43DP0DP04 118 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 TMEM11P17152 192 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 MYF6P23409 242 aa14.07□□□□□ -0.16
COL9A3-212ENST00000481800 IL3RAP26951 378 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms