RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 C8orf46Q8TAG6 207 aa8.44□□□□□ -1.06
USP39-215ENST00000481409 ENKURQ8TC29 256 aa8.44□□□□□ -1.06
USP39-215ENST00000481409 C10orf105Q8TEF2 133 aa8.44□□□□□ -1.06
USP39-215ENST00000481409 CHPT1Q8WUD6 406 aa8.44□□□□□ -1.06
USP39-215ENST00000481409 GIMAP1Q8WWP7 306 aa8.44□□□□□ -1.06
USP39-215ENST00000481409 DYRK2Q92630 601 aa8.44□□□□□ -1.06
USP39-215ENST00000481409 GALMQ96C23 342 aa8.44□□□□□ -1.06
USP39-215ENST00000481409 HDHD3Q9BSH5 251 aaPredicted RBP8.44□□□□□ -1.06
USP39-215ENST00000481409 C11orf54Q9H0W9 315 aaPredicted RBP8.44□□□□□ -1.06
USP39-215ENST00000481409 GAL3ST2Q9H3Q3 398 aa8.44□□□□□ -1.06
USP39-215ENST00000481409 CLN8Q9UBY8 286 aa8.44□□□□□ -1.06
USP39-215ENST00000481409 KIF25Q9UIL4 384 aa8.44□□□□□ -1.06
USP39-215ENST00000481409 SPTAN1Q13813 2472 aaKnown RBP8.43□□□□□ -1.06
USP39-215ENST00000481409 hCG_1809904A0A1W2PP81 198 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 A0A1W2PPE2 198 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 A0A1W2PR64 198 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 A0A1W2PRV1 198 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 A8MXK9 166 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 VWC2LB2RUY7 222 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 NDUFS7O75251 213 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 RGS11O94810 467 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 LIPFP07098 398 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 OR5H8P0DN80 308 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 CGB3P0DN86 165 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 CGB7P0DN87 165 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 NDUFB7P17568 137 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 ZBTB25P24278 435 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 GLIPR1P48060 266 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 EDDM3BP56851 147 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 TSPAN5P62079 268 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 RPL31P62899 125 aaKnown RBP8.43□□□□□ -1.06
USP39-215ENST00000481409 OXA1LQ15070 435 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 RBMS2Q15434 407 aaKnown RBP8.43□□□□□ -1.06
USP39-215ENST00000481409 TRIM16LQ309B1 348 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 ESCO2Q56NI9 601 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 OR52W1Q6IF63 320 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 LPCAT3Q6P1A2 487 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 PLET1Q6UQ28 207 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 ZNF841Q6ZN19 808 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 RTN4RL2Q86UN3 420 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 ZNF525Q8N782 197 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 OR52M1Q8NGK5 317 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 OR6F1Q8NGZ6 308 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 OR10J5Q8NHC4 309 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 TERB2Q8NHR7 220 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 GHITMQ9H3K2 345 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 TAF9BQ9HBM6 251 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 MCUBQ9NWR8 336 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 EHFQ9NZC4 300 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 CTSZQ9UBR2 303 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 ZNF230Q9UIE0 474 aaPredicted RBP8.43□□□□□ -1.06
USP39-215ENST00000481409 JPT1Q9UK76 154 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 POLR3KQ9Y2Y1 108 aaPredicted RBP8.43□□□□□ -1.06
USP39-215ENST00000481409 NUBP2Q9Y5Y2 271 aa8.43□□□□□ -1.06
USP39-215ENST00000481409 USP9YO00507 2555 aaPredicted RBP8.42□□□□□ -1.06
USP39-215ENST00000481409 TRBV6-7A0A0A0MS04 114 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 KBTBD11-OT1A0A1B0GTJ5 212 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 F2RL2O00254 374 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 ITGB1BP1O14713 200 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 SLC22A5O76082 557 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 LY6HO94772 140 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 IGHV2-5P01817 119 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 AMY2AP04746 511 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 ZNF735P0CB33 412 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 GSTT2P0CG29 244 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 RCC1P18754 421 aaPredicted RBP8.42□□□□□ -1.06
USP39-215ENST00000481409 IL2RGP31785 369 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 UCP3P55916 312 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 GNB2P62879 340 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 HOXA4Q00056 320 aaPredicted RBP8.42□□□□□ -1.06
USP39-215ENST00000481409 EDDM3AQ14507 147 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 CARTPTQ16568 116 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 PLA1AQ53H76 456 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 AVPI1Q5T686 147 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 WDR25Q64LD2 544 aaPredicted RBP8.42□□□□□ -1.06
USP39-215ENST00000481409 LYPD2Q6UXB3 125 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 ZDHHC22Q8N966 263 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 CREB3L1Q96BA8 519 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 DCTN5Q9BTE1 182 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 SSBP3Q9BWW4 388 aaPredicted RBP8.42□□□□□ -1.06
USP39-215ENST00000481409 BPESC1Q9GZL8 116 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 LIME1Q9H400 295 aa8.42□□□□□ -1.06
USP39-215ENST00000481409 HRNRQ86YZ3 2850 aaPredicted RBP8.42□□□□□ -1.06
USP39-215ENST00000481409 DOPEY2Q9Y3R5 2298 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 PPIAL4CA0A0B4J2A2 164 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 C12orf77C9JDV5 145 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 C15orf65H3BRN8 121 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 FOXH1O75593 365 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 TUSC2O75896 110 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 NDUFB6O95139 128 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 PMP2P02689 132 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 TCRBP04435 133 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 SCTP09683 121 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 FPR2P25090 351 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 BTCP35070 178 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 MECP2P51608 486 aaKnown RBP8.41□□□□□ -1.06
USP39-215ENST00000481409 MSMO1Q15800 293 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 CLEC12BQ2HXU8 276 aa8.41□□□□□ -1.06
USP39-215ENST00000481409 ZNF660Q6AZW8 331 aaPredicted RBP8.41□□□□□ -1.06
USP39-215ENST00000481409 FAHD2BQ6P2I3 314 aaPredicted RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms