RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 OR8H3Q8N146 312 aa14.89□□□□□ -0.03
CCDC88B-206ENST00000473405 ZFP41Q8N8Y5 198 aa14.89□□□□□ -0.03
CCDC88B-206ENST00000473405 OR10X1Q8NGY0 326 aa14.89□□□□□ -0.03
CCDC88B-206ENST00000473405 TMEM30CPA0ZSE6 113 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 HSD17B6O14756 317 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 GPX5O75715 221 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 IGKV1D-33P01593 117 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 IGKV1-33P01594 117 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 PF4P02776 101 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 CSTBP04080 98 aaKnown RBP14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 TMEM11P17152 192 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 FSTP19883 344 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 LOXL3P58215 753 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 ZNF816Q0VGE8 651 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 LRRC36Q1X8D7 754 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 MPV17LQ2QL34 196 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 Q499Y3 187 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 SLC22A6Q4U2R8 563 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 KHDC1LQ5JSQ8 128 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 CYGBQ8WWM9 190 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 TMEM80Q96HE8 168 aa14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 PAK1IP1Q9NWT1 392 aaPredicted RBP14.88□□□□□ -0.03
CCDC88B-206ENST00000473405 TRBV5-7A0A0A0MS05 114 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 PSMB11A5LHX3 300 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 FGF16O43320 207 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 SLC35A2P78381 396 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 ADARB1P78563 741 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 DOC2BQ14184 412 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 HES1Q14469 280 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 YIF1BQ5BJH7 314 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 FAM53AQ6NSI3 398 aaPredicted RBP14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 ETV3LQ6ZN32 361 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 ZNF497Q6ZNH5 498 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 ZNF329Q86UD4 541 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 UBALD1Q8TB05 177 aa14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 NOL4LQ96MY1 436 aaPredicted RBP14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 RCC2Q9P258 522 aaKnown RBP14.87□□□□□ -0.03
CCDC88B-206ENST00000473405 ZNF780AO75290 641 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 GTF2F2P13984 249 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 GZMHP20718 246 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 REG1BP48304 166 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 EBI3Q14213 229 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 HNF4GQ14541 408 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 ATAD3CQ5T2N8 411 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 TTC23Q5W5X9 447 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 LAIR2Q6ISS4 152 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 LINC00311Q8N616 119 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 OR52M1Q8NGK5 317 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 CCDC107Q8WV48 283 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 ARL11Q969Q4 196 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 OR14A2Q96R54 314 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 S100A13Q99584 98 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 CKLFQ9UBR5 152 aa14.86□□□□□ -0.03
CCDC88B-206ENST00000473405 IGHV1-3A0A0C4DH29 117 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 CCRL2O00421 344 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 SDCBPO00560 298 aaPredicted RBP14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 RRP9O43818 475 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 MT-ND4P03905 459 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 ST3GAL4Q11206 333 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 IZUMO1Q8IYV9 350 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 Q8N6K4 173 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 PACRGLQ8N7B6 248 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 LINC00482Q8N8I6 264 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 C8orf31Q8N9H6 132 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 SETD9Q8NE22 299 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 GGHQ92820 318 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 MUL1Q969V5 352 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 ST6GALNAC6Q969X2 333 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 RCC1LQ96I51 464 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 GFOD1Q9NXC2 390 aa14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 MRPS28Q9Y2Q9 187 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-206ENST00000473405 IGHV3-43A0A0B4J1X8 118 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 IGHV3-72A0A0B4J1Y9 119 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 A0A1W2PPK0 400 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 AIPO00170 330 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 ORC5O43913 435 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 IGHG2P01859 326 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 GNAO1P09471 354 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 IGHV3-43DP0DP04 118 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 LYPD6Q86Y78 171 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 TMEM104Q8NE00 496 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 NEK7Q8TDX7 302 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 CHPT1Q8WUD6 406 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 CYYR1Q96J86 154 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 EAF1Q96JC9 268 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 DERL3Q96Q80 235 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 LINC00527Q9UJ94 153 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 DNAH9Q9NYC9 4486 aa14.84□□□□□ -0.03
CCDC88B-206ENST00000473405 PNMA8CA0A1B0GUJ8 204 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 SERPINE3A8MV23 424 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 C12orf77C9JDV5 145 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 GAPDHP04406 335 aaKnown RBP14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 KRTAP10-11P60412 298 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 RPL23AP62750 156 aaKnown RBP14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 MED21Q13503 144 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 GPR176Q14439 515 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 GLIPR1L1Q6UWM5 242 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 C18orf65Q6ZTR6 163 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 OR2W3Q7Z3T1 314 aa14.83□□□□□ -0.04
CCDC88B-206ENST00000473405 MOB3BQ86TA1 216 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms