RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 NHLH1Q02575 133 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 NHLH2Q02577 135 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 SFTPA1Q8IWL2 248 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 ZNF721Q8TF20 911 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 TMEM191AQ9H0A3 160 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 MYOZ1Q9NP98 299 aaPredicted RBP16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 ZNF253O75346 499 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 FCGR3AP08637 254 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 HOXD4P09016 255 aaPredicted RBP16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 SRP14P37108 136 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 EML2O95834 649 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 LRRC10Q5BKY1 277 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 OR4F17Q8NGA8 305 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 OR5A2Q8NGI9 324 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 OR2T6Q8NHC8 308 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 ZDHHC16Q969W1 377 aa16.63■□□□□ 0.25
CCDC88B-204ENST00000463837 PQLC2LA1A4F0 135 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 HKR1P10072 659 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 SPINK2P20155 84 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 C9orf40Q8IXQ3 194 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 OR2Z1Q8NG97 314 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 M0R296 226 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 CDX2Q99626 313 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 A0A1W2PN81 502 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 M0QZ24 198 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 PMELP40967 661 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 OPRK1P41145 380 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 TCL1AP56279 114 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 CEBPEQ15744 281 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 SLC36A1Q7Z2H8 476 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 TMEM38BQ9NVV0 291 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 PLA2G3Q9NZ20 509 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 PILRAQ9UKJ1 303 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 J3QT63 122 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 PAFAH1B2P68402 229 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 SLC7A10Q9NS82 523 aa16.62■□□□□ 0.25
CCDC88B-204ENST00000463837 NDUFB3O43676 98 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 CXorf1O96002 111 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 GCGP01275 180 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 LYG1Q8N1E2 194 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 OR2M3Q8NG83 312 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 OR1L6Q8NGR2 347 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 DYRK2Q92630 601 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 WNT2BQ93097 391 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 TMEM204Q9BSN7 226 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 LRRC3CA6NJW4 275 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 SPRY3O43610 288 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 GNG10P50151 68 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 A0A1B0GTQ1 180 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 RBM11P57052 281 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 TLNRD1Q9H1K6 362 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 M0R2Z0 102 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 PAGE4O60829 102 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 OR5AL1P0C617 328 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM209BQ5JX69 171 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 HSD17B10Q99714 261 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 GAL3ST2Q9H3Q3 398 aa16.61■□□□□ 0.25
CCDC88B-204ENST00000463837 P2RY4P51582 365 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 LILRB1Q8NHL6 650 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 MRGPRDQ8TDS7 321 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 P2RX4Q99571 388 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 TXNDC17Q9BRA2 123 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 IL17BQ9UHF5 180 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 GREB1LQ9C091 1923 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 IGLV1-36A0A0B4J1U3 117 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 GREM1O60565 184 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 HTR1DP28221 377 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 MEOX1P50221 254 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 PIGYQ3MUY2 71 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 CYB561D1Q8N8Q1 229 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 LRRC29Q8WV35 223 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 GLRX2Q9NS18 164 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 TUBD1Q9UJT1 453 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 MOSPD3O75425 235 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 IL9P15248 144 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 KIR2DL1P43626 348 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 OR10AD1Q8NGE0 317 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 PRSS3P2Q8NHM4 247 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 MDKP21741 143 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 C16orf82Q7Z2V1 217 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 BLNKQ8WV28 456 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 LRRC3BQ96PB8 259 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 DOK5Q9P104 306 aa16.6■□□□□ 0.25
CCDC88B-204ENST00000463837 UBE2L3P68036 154 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 TMEM97Q5BJF2 176 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 TMEM255AQ5JRV8 349 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 HES3Q5TGS1 186 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 VSTM2AQ8TAG5 236 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 ABLIM2Q6H8Q1 611 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 TMEM252Q8N6L7 170 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 MRGPRFQ96AM1 343 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A10PA6NDY2 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A18PA6NE21 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A16PA6NEW6 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A20PA6NIJ5 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A8PA6NJQ4 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A7PA6NKC0 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A22PA8MWA6 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A12PA8MX19 464 aa16.59■□□□□ 0.25
CCDC88B-204ENST00000463837 FAM90A5PA8MXJ8 464 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms