RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 RHOXF1Q8NHV9 184 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 UBALD1Q8TB05 177 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 RAX2Q96IS3 184 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 EAF1Q96JC9 268 aaPredicted RBP12.67□□□□□ -0.38
COL7A1-204ENST00000462475 ST3GAL6Q9Y274 331 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 H0YHG0 523 aa12.66□□□□□ -0.38
COL7A1-204ENST00000462475 C15orf65H3BRN8 121 aa12.66□□□□□ -0.38
COL7A1-204ENST00000462475 OR7C1O76099 320 aaPredicted RBP12.66□□□□□ -0.38
COL7A1-204ENST00000462475 GAPDHP04406 335 aaKnown RBP12.66□□□□□ -0.38
COL7A1-204ENST00000462475 LIMS3P0CW19 117 aa12.66□□□□□ -0.38
COL7A1-204ENST00000462475 LIMS4P0CW20 117 aa12.66□□□□□ -0.38
COL7A1-204ENST00000462475 GPR12P47775 334 aa12.66□□□□□ -0.38
COL7A1-204ENST00000462475 RBM11P57052 281 aaKnown RBP12.66□□□□□ -0.38
COL7A1-204ENST00000462475 RAB40BQ12829 278 aa12.66□□□□□ -0.38
COL7A1-204ENST00000462475 TGIF2LXQ8IUE1 241 aa12.66□□□□□ -0.38
COL7A1-204ENST00000462475 IZUMO1Q8IYV9 350 aa12.66□□□□□ -0.38
COL7A1-204ENST00000462475 IFT22Q9H7X7 185 aa12.66□□□□□ -0.38
COL7A1-204ENST00000462475 FAM118AQ9NWS6 357 aa12.66□□□□□ -0.38
COL7A1-204ENST00000462475 TMEM30CPA0ZSE6 113 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 NCBP2LA6PVI3 153 aaKnown RBP12.65□□□□□ -0.38
COL7A1-204ENST00000462475 AP4M1O00189 453 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 GEMIN2O14893 280 aaKnown RBP12.65□□□□□ -0.38
COL7A1-204ENST00000462475 RPLP1P05386 114 aaKnown RBP12.65□□□□□ -0.38
COL7A1-204ENST00000462475 RAB25P57735 213 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 DGCR2P98153 550 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 DEFB136Q30KP8 78 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 NHLRC3Q5JS37 347 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 Q8N9W7 124 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 GPR148Q8TDV2 347 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 APH1BQ8WW43 257 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 TFAP2CQ92754 450 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 ARL11Q969Q4 196 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 TMEM106AQ96A25 262 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 ORAI1Q96D31 301 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 RBMXL1Q96E39 390 aaKnown RBP12.65□□□□□ -0.38
COL7A1-204ENST00000462475 Q96MT0 163 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 WWC2-AS2Q96NR7 200 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 ABCG5Q9H222 651 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 IL36GQ9NZH8 169 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 ING4Q9UNL4 249 aa12.65□□□□□ -0.38
COL7A1-204ENST00000462475 IGHV3-43A0A0B4J1X8 118 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 CCL24O00175 119 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 SDCBPO00560 298 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-204ENST00000462475 MPZL2O60487 215 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 CD2P06729 351 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 IGHV3-43DP0DP04 118 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 SERPINA2P20848 420 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 LUMP51884 338 aaPredicted RBP12.64□□□□□ -0.39
COL7A1-204ENST00000462475 DDI2Q5TDH0 399 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 TEX38Q6PEX7 206 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 LINC00311Q8N616 119 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 TMEM104Q8NE00 496 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 OR52N1Q8NH53 320 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 CCDC107Q8WV48 283 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 METTL9Q9H1A3 318 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 DCLRE1BQ9H816 532 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 LIN7CQ9NUP9 197 aaKnown RBP12.64□□□□□ -0.39
COL7A1-204ENST00000462475 MRPS18AQ9NVS2 196 aaKnown RBP12.64□□□□□ -0.39
COL7A1-204ENST00000462475 GFOD1Q9NXC2 390 aa12.64□□□□□ -0.39
COL7A1-204ENST00000462475 A0A1W2PP11 408 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 ZNF736B4DX44 427 aaPredicted RBP12.63□□□□□ -0.39
COL7A1-204ENST00000462475 SLC31A2O15432 143 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 GZMHP20718 246 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 ZNF93P35789 620 aaPredicted RBP12.63□□□□□ -0.39
COL7A1-204ENST00000462475 PPP3R1P63098 170 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 DCTN2Q13561 401 aaKnown RBP12.63□□□□□ -0.39
COL7A1-204ENST00000462475 PNLIPRP3Q17RR3 467 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 ATAD3CQ5T2N8 411 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 ZFP1Q6P2D0 407 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 UNQ9370/PRO34162Q6UXP9 181 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 OR52M1Q8NGK5 317 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 OR13C5Q8NGS8 318 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 OR2T10Q8NGZ9 312 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 RTN4IP1Q8WWV3 396 aaPredicted RBP12.63□□□□□ -0.39
COL7A1-204ENST00000462475 ST6GALNAC6Q969X2 333 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 SLC29A1Q99808 456 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 HSPB9Q9BQS6 159 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 TMEM138Q9NPI0 162 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 PLSCR3Q9NRY6 295 aa12.63□□□□□ -0.39
COL7A1-204ENST00000462475 RPL36Q9Y3U8 105 aaKnown RBP12.63□□□□□ -0.39
COL7A1-204ENST00000462475 SIRT4Q9Y6E7 314 aaPredicted RBP12.63□□□□□ -0.39
COL7A1-204ENST00000462475 LOC100130705A0A1B0GUX0 176 aa12.62□□□□□ -0.39
COL7A1-204ENST00000462475 MAGEA13PA6NCF6 341 aa12.62□□□□□ -0.39
COL7A1-204ENST00000462475 CSTBP04080 98 aaKnown RBP12.62□□□□□ -0.39
COL7A1-204ENST00000462475 GPR50Q13585 617 aa12.62□□□□□ -0.39
COL7A1-204ENST00000462475 SMN1Q16637 294 aaKnown RBP12.62□□□□□ -0.39
COL7A1-204ENST00000462475 MPV17LQ2QL34 196 aa12.62□□□□□ -0.39
COL7A1-204ENST00000462475 KLHL22Q53GT1 634 aa12.62□□□□□ -0.39
COL7A1-204ENST00000462475 CXorf66Q5JRM2 361 aaPredicted RBP12.62□□□□□ -0.39
COL7A1-204ENST00000462475 OR2G6Q5TZ20 316 aa12.62□□□□□ -0.39
COL7A1-204ENST00000462475 RPL22L1Q6P5R6 122 aaKnown RBP12.62□□□□□ -0.39
COL7A1-204ENST00000462475 LINC00596Q86U02 117 aa12.62□□□□□ -0.39
COL7A1-204ENST00000462475 C8orf31Q8N9H6 132 aa12.62□□□□□ -0.39
COL7A1-204ENST00000462475 NEK7Q8TDX7 302 aa12.62□□□□□ -0.39
COL7A1-204ENST00000462475 AIPO00170 330 aa12.61□□□□□ -0.39
COL7A1-204ENST00000462475 ORC5O43913 435 aa12.61□□□□□ -0.39
COL7A1-204ENST00000462475 MOSP00540 346 aa12.61□□□□□ -0.39
COL7A1-204ENST00000462475 MT-ND4P03905 459 aa12.61□□□□□ -0.39
COL7A1-204ENST00000462475 IL3RAP26951 378 aa12.61□□□□□ -0.39
COL7A1-204ENST00000462475 CD1BP29016 333 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms