RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 BSXQ3C1V8 233 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 DMRTA1Q5VZB9 504 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 MAML2Q8IZL2 1156 aaPredicted RBP10.06□□□□□ -0.8
CPSF3-202ENST00000460593 UCN2Q96RP3 112 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 LRP4O75096 1905 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 B4E171 279 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 ZNF737O75373 536 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 CA3P07451 260 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 DTYMKP23919 212 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 TSPAN7P41732 249 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 TNFRSF4P43489 277 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 ARL4DP49703 201 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 ERVFC1-1P60608 527 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 ID3Q02535 119 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 PNRC1Q12796 327 aaPredicted RBP10.06□□□□□ -0.8
CPSF3-202ENST00000460593 PLPPR5Q32ZL2 321 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 Q6ZRM9 215 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 SLC25A26Q70HW3 274 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 OSR2Q8N2R0 312 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 SNIP1Q8TAD8 396 aaKnown RBP10.06□□□□□ -0.8
CPSF3-202ENST00000460593 UBALD1Q8TB05 177 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 TMEM106CQ9BVX2 250 aa10.06□□□□□ -0.8
CPSF3-202ENST00000460593 COL6A3P12111 3177 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 A0A1W2PNV4 684 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 MAP1LC3B2A6NCE7 125 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 G3V3Y1 287 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 DLEU1O43261 78 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 CA11O75493 328 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 IGKV1D-33P01593 117 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 IGKV1-33P01594 117 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 IGLV3-1P01715 115 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 GUCA1AP43080 201 aaPredicted RBP10.05□□□□□ -0.8
CPSF3-202ENST00000460593 TRA2AQ13595 282 aaKnown RBP eCLIP10.05□□□□□ -0.8
CPSF3-202ENST00000460593 NMSQ5H8A3 153 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 OIT3Q8WWZ8 545 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 TMEM18Q96B42 140 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 TBX15Q96SF7 602 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 MAP1LC3BQ9GZQ8 125 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 SLC25A22Q9H936 323 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 MYOTQ9UBF9 498 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 RNF115Q9Y4L5 304 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 GRIFINA4D1Z8 144 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 LCATP04180 440 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 MSR1P21757 451 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 HOXA6P31267 233 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 OR1D5P58170 312 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 ZNF774Q6NX45 483 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 TCF23Q7RTU1 214 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 TMPRSS7Q7RTY8 843 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 H1FOOQ8IZA3 346 aaPredicted RBP10.05□□□□□ -0.8
CPSF3-202ENST00000460593 OR5L2Q8NGL0 311 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 SCGB1C1Q8TD33 95 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 OR5B12Q96R08 314 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 METTL7AQ9H8H3 244 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 TMEM242Q9NWH2 141 aa10.05□□□□□ -0.8
CPSF3-202ENST00000460593 CST2P09228 141 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 RAB4AP20338 218 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 DAZAP2Q15038 168 aaPredicted RBP10.04□□□□□ -0.8
CPSF3-202ENST00000460593 IQCJQ1A5X6 159 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 TMEM241Q24JQ0 296 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 ARSJQ5FYB0 599 aaPredicted RBP10.04□□□□□ -0.8
CPSF3-202ENST00000460593 HAPLN4Q86UW8 402 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 ZDHHC23Q8IYP9 409 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 PIGCQ92535 297 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 LHX4Q969G2 390 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 EML6Q6ZMW3 1958 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 TRAV39A0A0B4J263 110 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 TRBV11-1A0A0K0K1C0 115 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 PGPEP1LA6NFU8 196 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 NPIPB13A6NJU9 1138 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 NPIPB4C9JG80 1138 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 OR3A1P47881 315 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 UCP3P55916 312 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 MALLQ13021 153 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 HLA-BQ31612 363 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 GJC3Q8NFK1 279 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 GPR146Q96CH1 333 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 OPN3Q9H1Y3 402 aaPredicted RBP10.04□□□□□ -0.8
CPSF3-202ENST00000460593 OBP2AQ9NY56 170 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 VAX2Q9UIW0 290 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 A0A0U1RQK1 487 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 A0A0U1RQV5 110 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 SLC22A20A6NK97 555 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.04□□□□□ -0.8
CPSF3-202ENST00000460593 OR4F5Q8NH21 305 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 OR2V1Q8NHB1 315 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 TMEM170AQ8WVE7 144 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 TMEM56Q96MV1 263 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 OR4F4Q96R69 305 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 SPIN2AQ99865 258 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 SPIN2BQ9BPZ2 258 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 PARLQ9H300 379 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 MSL2Q9HCI7 577 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 TMEM56-RWDD3S4R434 201 aa10.04□□□□□ -0.8
CPSF3-202ENST00000460593 UBE2L5PA0A1B0GUS4 154 aa10.03□□□□□ -0.8
CPSF3-202ENST00000460593 C1QTNF9BB2RNN3 333 aa10.03□□□□□ -0.8
CPSF3-202ENST00000460593 GCH1P30793 250 aa10.03□□□□□ -0.8
CPSF3-202ENST00000460593 MDH2P40926 338 aaKnown RBP10.03□□□□□ -0.8
CPSF3-202ENST00000460593 IL24Q13007 206 aa10.03□□□□□ -0.8
CPSF3-202ENST00000460593 FAM78BQ5VT40 261 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms